Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00698 ATGAAGTCCTTTGAAAATATTTATGATACCATTAACTTAAAAAATCAAAATAGTAACATGTTAGGTTTCTCTGTCTCTCCTCAAATGAATATAGATGTTCCTTCCTTTGCTGCTGCTGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAAGTGAACATGTTGGATTGTATTCACCCTTACCTATTATGCTTGATGGATCAACATATGGAATAGAAGCTCTTAGTAGATCACAATCACAAGCAATGGGAATCCCTCAATATGAATGCAATAGAAAAGAAGCACTACAAATGAACATGGATAGTATTTTTTACAACCAAACTTCATGGCATAATAAACCAAACAATCCAAATAATGTAAGTGATGTACAAGGGAATACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAATTCTCGTATTACACCGTCTTAGGAAATCAAGATGTGATGTTAGAAGGGTCGATGAAAAATGAACTAAAAGATAGTGTCCAACTCCCAAATATAGTTGAAGATGAAGTTTATGATCTTAAGAGATGGATCTCAAGGGACATTCATGCTACTAGCCATGCACAAGAGTTAAAATATGGGTTGTCTATGAGTCCTAGCTCACAATCAAGTTATGTTACAAGTTCACAACAAACATCAACTATTGATTCTGTTTCCATTGATAGAATGAAAATGAAGCCTGAAATAGTGAACTTGAAAAAGAATCAGAATCAAACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGGAGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACACGTATAAATTTTCCATTGGAAAATTATCAAAAGGAGCTTGAAGAAATGAAGAAAATGACTAGACAAGAATATGTTGCTCATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTATAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTTAGAGGAGCAAATGCTGTTACAAATTTTGATATAACAAAATATGATGTGGAAAAAATTATAGCAAGCAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACACAAAAATGGATGAAGTAATTAACATTGAAGAAGCCATTAATCCAATGCAGAAGAAGTGCAAAATTCAATCATTCTCAATAGGTTTAGATGAAATATATAATCAAGAAATAGATGAATATTCAAATAGAGTGTTACATATATCAAATCCTTCTTCAATTGTGACAAGTTTGAGTAGCTCAAGAGAACAAAGCCCTGAAAACAAAACAAGCTTACCAATGCTCTTTGGAATGAGTTCAACAGAATCAATGTCTTCATTTTCTTTGCCTCAAATGCCACTGTCTTTTTTTGCTGCTTGGAATGATGCAGCATAG 1650 0.3552 MKSFENIYDTINLKNQNSNMLGFSVSPQMNIDVPSFAAAATETVPTSFYYHPTPLHNYGFYYGLESEHVGLYSPLPIMLDGSTYGIEALSRSQSQAMGIPQYECNRKEALQMNMDSIFYNQTSWHNKPNNPNNVSDVQGNTSLLESLREHQEQQFSYYTVLGNQDVMLEGSMKNELKDSVQLPNIVEDEVYDLKRWISRDIHATSHAQELKYGLSMSPSSQSSYVTSSQQTSTIDSVSIDRMKMKPEIVNLKKNQNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNTKMDEVINIEEAINPMQKKCKIQSFSIGLDEIYNQEIDEYSNRVLHISNPSSIVTSLSSSREQSPENKTSLPMLFGMSSTESMSSFSLPQMPLSFFAAWNDAA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00698 549 FunFam AP2-like ethylene-responsive transcription factor 363 424 - -
Trre10g00698 549 SUPERFAMILY DNA-binding domain 363 423 IPR016177 GO:0003677
Trre10g00698 549 SMART rav1_2 364 428 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 SMART rav1_2 265 334 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 SUPERFAMILY DNA-binding domain 264 330 IPR016177 GO:0003677
Trre10g00698 549 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 204 452 - -
Trre10g00698 549 CDD AP2 363 424 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 PRINTS Ethylene responsive element binding protein signature 404 424 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 FunFam AP2-like ethylene-responsive transcription factor ANT 264 330 - -
Trre10g00698 549 Gene3D AP2/ERF domain 364 424 IPR036955 GO:0003700|GO:0006355
Trre10g00698 549 Gene3D AP2/ERF domain 264 330 IPR036955 GO:0003700|GO:0006355
Trre10g00698 549 CDD AP2 264 328 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 ProSiteProfiles AP2/ERF domain profile. 265 328 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 Pfam AP2 domain 265 320 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 Pfam AP2 domain 365 414 IPR001471 GO:0003700|GO:0006355
Trre10g00698 549 ProSiteProfiles AP2/ERF domain profile. 364 422 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00698 Trre-Chr10 5167095 5170444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00698 57 548 AP2-EREBP Transcription Factor Family AT4G37750 42.707 4.11e-125 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre10g00698 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00698 K09285 - gmx:100792451 564.303