Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00691 ATGGGCTTTAATGATCAAAATTCTCTTCACCTTGTTCTAGGCTTATCTTTGAATACTACTCCAAAGGAAATAACCACCACCACCACCACCACAAACACCACCATGAATCCCTATTCCTCCACCGAGCCATCTTTAACGTTAGGACTCTCCGGTGAGAGTTATAATAAGGTTCATAGAATCAAACAAACTTCTTCACCTCATAGTGTTGTTGTTTCATCTTTCTCAAATGGAAGAGTACTTCAAGTGAAGAGAGAAAGAGAGGAAGAAGAAGATCAAGAAGTAGAAGAAGAAAGAGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACTAATGCTAGAAAGAAACTTAGGCTTACCAAAGAACAATCTTTACTTTTGGAAGAAAGCTTCAAATTGCAAAGCACTCTTAATCCTAAAGAAAAACAAGCTTTAGCAAAGCAGTTGAATCTAAGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCAAGAACAAAGCTGAAACAAACAGAGGTTGATTGCGAGTTTTTGAAGAAATGTTGTGAAACATTAACGGACGAAAATAGGAGACTAAAGAAAGAGTTACAAGAGCTAAAATCATTGAAGCAATCACAACCTTTATACATGCCTATGCCTGCAGCCACACTCTCCATGTGTCCATCTTGCGACCGACTCGGCCGCGTCGCGGACGGTGGTGGTTCGAATAAGAAGATCACTGCCTTCACCATGGCTCCCAACACTCATTTCTACAATCCTTTCAACAATCCTTCTGCAGCATGTTAA 789 0.4043 MGFNDQNSLHLVLGLSLNTTPKEITTTTTTTNTTMNPYSSTEPSLTLGLSGESYNKVHRIKQTSSPHSVVVSSFSNGRVLQVKREREEEEDQEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKQSQPLYMPMPAATLSMCPSCDRLGRVADGGGSNKKITAFTMAPNTHFYNPFNNPSAAC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00691 262 Gene3D - 107 175 - -
Trre10g00691 262 MobiDBLite consensus disorder prediction 96 114 - -
Trre10g00691 262 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Trre10g00691 262 FunFam Homeobox-leucine zipper protein 18 97 175 - -
Trre10g00691 262 CDD homeodomain 114 171 IPR001356 GO:0003677
Trre10g00691 262 Pfam Homeodomain 114 168 IPR001356 GO:0003677
Trre10g00691 262 SUPERFAMILY Homeodomain-like 107 171 IPR009057 -
Trre10g00691 262 Pfam Homeobox associated leucine zipper 170 205 IPR003106 GO:0006355|GO:0043565
Trre10g00691 262 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Trre10g00691 262 SMART halz 170 213 IPR003106 GO:0006355|GO:0043565
Trre10g00691 262 Coils Coil 176 206 - -
Trre10g00691 262 SMART HOX_1 112 174 IPR001356 GO:0003677
Trre10g00691 262 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 241 - -
Trre10g00691 262 MobiDBLite consensus disorder prediction 82 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00691 Trre-Chr10 5051422 5052958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00691 1 262 Homeobox Transcription Factor Family AT4G37790 57.895 1.39e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre10g00691 Homeodomain 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00691 K09338 - gmx:100795135 293.893