Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00683 ATGGAAAAAATTAAAAAACTCATTCTCATTCTTCTCTTTTCATTACTATGTTCAAATGGAAGCACTTTTTCACTCTCAAGTGACTATGAAATTTTGCTTCATGTCAAAAACACTCAAATTGATGACCAAAACAAGAGTCTACACAATTGGCTTCCAAACACTGAACACAATCCTTGTAACTGGATCGGCATAACCTGCGATTCACGAAACAAATCAGTTATATCCATCGACCTCTCAGAAATCGGCATTTATGGCGATTTTCCCTATAATTTCTGTCGAATTCCAACTCTTCAAAACCTTTCTCTTGCTTTCAATTATCTTGGCAATGAAATTTCCTCACATTCCATACTACCATGTTCACACCTTCGTCTCTTGAACATCTCCGATAACTTATTCGTTGGTACCTTACCGGAATTCAACGCAGAAATCTTTCAACTAAGAGTATTCGACGCCTCAAACAACAACTTCTCCGGTGATATTCCGGCTAGTTTTGGCCGGTTACCACACCTGAAAGTACTCATTTTGTCTAATAACCTTTTCACCGGTGACATTCCGGAGAGTTTTGGCCTATTTCCGCAACTGAATGTACTTATTTTGTCCGGTAATCTTTTCACCGGAACAATTCCTCCATTTTTAGGTAATCTCAGTGAATTAACTCAATTAGAACTTGCTTTTACAGAAACAATGAAACCAGGTCCTTTACCTTCTCAACTAGGAAATCTTACAAAGCTAGAAATTCTCTACCTTGGAAATATCAACCTCATAGGTAACATACCAGATTCTATTGGAAACCTTATTTCCATCAAAAACTTTGATTTGTCTACAAATTCCTTGTCTGGTAAAATTCCTGAAACCATTTCTGGTATGAAAAATGTTGAAAAAATTGAACTATATGAAAACAATCTTTCTGGTGAAATTCCACAAGGTTTAACAAATCTTACAAATTTGTTTCTATTAGACCTCTCTCAGAACGCTCTCACCGGAAATTTTTCGACAGAACTCGCTTCACTGAATCTTTCTGTTCTTCACTTGAATGACAATTTTCTCAGTGGTGAAGTTCCAGAAAGTTTAGCTTTGAATCCAAATTTGCAGAATTTGAAAATTTTCAACAATAGCTTTTCAGGGAAACTACCACAAGATCTTGGAAAATATTCTTCCATTGAAGAAATCGATGTTTCAACAAATAACTTTATTGGAGAGTTACCAAAATTTATCTGTCAAAAGAAGAAGCTTCAAAGACTTGTTACATTCAAAAACCGATTTTCTGGTTCTCTTCCTGATGAGTATGGTGATTGTGATTCTCTTCGTTATGTAAGAATTGAGAACAATGAACTCTCTGGTCCAGTTCCAGAAAGATTCTGGAACCTGCCAAATTTTTCTTTTCTGAAAATGGATCATAACAGGTTTGAAGGTTCAGTCTCAGGTTCTATCAGAGCAAAGGGAATGATCAAACTAGTTTTAGCCGGTAATAGGTTTTCCGGTGAGTTTCCGGTAGGTGTCTGCGAGCTTATTGAGCTCATGCAAATTGACATTGGAAATAACAGGTTTACCGGTGAAGTTCCTACCTGCATAACCGGTTTGAAAAAGTTACAGAAACTGAATATGCAGGGGAACATGTTCACCGGTAAAATTCCTGGTAATGTATCTTCATGGACTGAATTAACCGAGTTAAACCTATCGAATAACCAGTTCACTGGTTCAATTCCACCGGAACTTGGTAATTTGCCTGGTTTAATATACCTTGATCTCTCCGTTAATTCTTTAACGGGGAAGATTCCGGTGGAGTTAACAAGTTTAAGGTTGAATCAGTTCAATGTTTCTAATAACAAATTGTCCGGTGAGGTTCCTTCGGATTTTAACCGCGAAGTTTACTTATCGGGTCTAATAGGTAACCCGGGTTTGTGTAGCAATGTTATGGAAAACTTTCATCCTTGTTCAAAACATAGACCCTTTTCAGTTGTTGCAATAATTGTCTTAGCTGCTTCTGTTGTGTTGATTTTTGTGTCTGGTTTATGGTTCCTGAAGAAAAAGTCAAAATCTTTTGTTGGAAAATCCAAACGGGCTTTTATGACAACAGCTTTTCAGAGAGTTGGGTTCAATGAGGAAGATATAGTTCCTTTTTTAACCAATGAGAATTTGATTGGAAGAGGCGGGTCGGGTCAGGTTTATAAAGTGAAAGTGAAAACGGGTCAAGTAGTTGCTGTGAAGAAACTTTGGGGTGGTGGAACACAGAAACCTGATATAGAATCTGTGTTCAAGTCAGAGATTGAAACATTGGGTAGAATTAGACATGCTAATATAGTAAAACTGTTGTTTTGTTGTAGTGCTGATGATTTCAGAATTTTGGTTTATGAGTATATGGAAAATGGGAGTTTAGGTGATGTTTTGCATGAGGGGAAGTTTGAGGAATTGTTGGATTGGTCTAAGAGATTTGGAATTGCTTTAGGTGCTGCTAAAGGGTTGGCTTATTTACACCATGATTGTGTTCCTCCTATTGTTCATAGAGATGTTAAGAGTAATAACATATTACTTGATCATGATTTTGTGCCTCGCGTCGCTGATTTTGGACTTGCTAAGACATTGCAGCGTGACACAAGTGACGATGCTATGTCTAGAGTTGCTGGTTCATATGGTTACATTGCTCCAGAATATGGTTATACATTGAAAGTGACTGAGAAGAGTGATGTGTATAGTTTTGGTGTGGTGTTGATGGAATTGATAACTGGGAAGAGGCCAAATGACTCATGTTTTGGTGAGAACAAAGATATTGTGAAGTGGATAACTGAGATTGCTTTATCAACATCACATGAAGGAGGCCTAGATTGTGTTGTGACACAGATTGTGGACCCAAGATTGAACTTAGATACTTGTGATTATGAAGAGGTTGAAAAGGTTTTGAATGTGGCTCTACTTTGTACATCAACATTTCCAATTAATAGACCTTCAATGAGAAAGGTGGTTGAATTGCTTAAGGACCAGAAACTAGCTCGTCTCAAGTCATGA 3003 0.373 MEKIKKLILILLFSLLCSNGSTFSLSSDYEILLHVKNTQIDDQNKSLHNWLPNTEHNPCNWIGITCDSRNKSVISIDLSEIGIYGDFPYNFCRIPTLQNLSLAFNYLGNEISSHSILPCSHLRLLNISDNLFVGTLPEFNAEIFQLRVFDASNNNFSGDIPASFGRLPHLKVLILSNNLFTGDIPESFGLFPQLNVLILSGNLFTGTIPPFLGNLSELTQLELAFTETMKPGPLPSQLGNLTKLEILYLGNINLIGNIPDSIGNLISIKNFDLSTNSLSGKIPETISGMKNVEKIELYENNLSGEIPQGLTNLTNLFLLDLSQNALTGNFSTELASLNLSVLHLNDNFLSGEVPESLALNPNLQNLKIFNNSFSGKLPQDLGKYSSIEEIDVSTNNFIGELPKFICQKKKLQRLVTFKNRFSGSLPDEYGDCDSLRYVRIENNELSGPVPERFWNLPNFSFLKMDHNRFEGSVSGSIRAKGMIKLVLAGNRFSGEFPVGVCELIELMQIDIGNNRFTGEVPTCITGLKKLQKLNMQGNMFTGKIPGNVSSWTELTELNLSNNQFTGSIPPELGNLPGLIYLDLSVNSLTGKIPVELTSLRLNQFNVSNNKLSGEVPSDFNREVYLSGLIGNPGLCSNVMENFHPCSKHRPFSVVAIIVLAASVVLIFVSGLWFLKKKSKSFVGKSKRAFMTTAFQRVGFNEEDIVPFLTNENLIGRGGSGQVYKVKVKTGQVVAVKKLWGGGTQKPDIESVFKSEIETLGRIRHANIVKLLFCCSADDFRILVYEYMENGSLGDVLHEGKFEELLDWSKRFGIALGAAKGLAYLHHDCVPPIVHRDVKSNNILLDHDFVPRVADFGLAKTLQRDTSDDAMSRVAGSYGYIAPEYGYTLKVTEKSDVYSFGVVLMELITGKRPNDSCFGENKDIVKWITEIALSTSHEGGLDCVVTQIVDPRLNLDTCDYEEVEKVLNVALLCTSTFPINRPSMRKVVELLKDQKLARLKS 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00683 1000 SMART serkin_6 708 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00683 1000 Pfam Protein kinase domain 710 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00683 1000 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 270 989 - -
Trre10g00683 1000 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Trre10g00683 1000 Gene3D Phosphorylase Kinase; domain 1 699 786 - -
Trre10g00683 1000 FunFam Leucine-rich repeat receptor-like protein kinase TDR 335 647 - -
Trre10g00683 1000 Gene3D Ribonuclease Inhibitor 25 311 IPR032675 -
Trre10g00683 1000 Gene3D Ribonuclease Inhibitor 312 646 IPR032675 -
Trre10g00683 1000 ProSiteProfiles Protein kinase domain profile. 708 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00683 1000 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Trre10g00683 1000 FunFam leucine-rich repeat receptor-like protein kinase TDR 787 1000 - -
Trre10g00683 1000 SUPERFAMILY RNI-like 99 466 - -
Trre10g00683 1000 Pfam Leucine rich repeat 553 611 IPR001611 GO:0005515
Trre10g00683 1000 Pfam Leucine rich repeat 146 203 IPR001611 GO:0005515
Trre10g00683 1000 Pfam Leucine rich repeat 268 326 IPR001611 GO:0005515
Trre10g00683 1000 SUPERFAMILY Protein kinase-like (PK-like) 708 990 IPR011009 -
Trre10g00683 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Trre10g00683 1000 SUPERFAMILY L domain-like 410 620 - -
Trre10g00683 1000 Gene3D Transferase(Phosphotransferase) domain 1 787 998 - -
Trre10g00683 1000 FunFam Leucine-rich receptor-like protein kinase family protein 234 332 - -
Trre10g00683 1000 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 684 786 - -
Trre10g00683 1000 ProSiteProfiles Leucine-rich repeat profile. 553 576 IPR001611 GO:0005515
Trre10g00683 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 113 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00683 Trre-Chr10 4932973 4936224 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00683 24 994 Receptor kinase-like Gene Family AT5G65710 53.100 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g00683 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00683 - - tpra:123909546 1840.85