Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00680 ATGATGGAAATTATGTCTCCCATCTATTTGCCTGAACTTGGAATGGATGATCTCAACTTCTTGCACCAATACCCTATGGATTCTCTTGCATCAGATGCATTTGACAACTTAGGATTTCACTTTGACAACAACTACGAAACTGTACCAAATTGTTTCCCAGTTGAAACTCATCATCATCCTGATGATAACTATGTTGCTCAAACAAGACCAACCAAGAAGATCAAGACATCAATTAACACTTCTTCCTATTCATCAACACCTCAACTCATTTCATTTGAGCACTCCAATGCAACGCCAATTGCTTCTAATGAGGAATTTTACAGCCTTGATTATTCCGATGTAAAGCCTAAAATCGAGAAAGGGTGTAGCGAAAACAAGGATTTTGCGGCAAATTATGATAACCGAGCGAATCAAACCAGGAATAGAACTCAAGCTCAAGAACATGTAATGGCCGAAAGAAAGCGAAGGGAAAAGCTCACTCGAAGTTTTATTGCTCTTTCCGCCATCGTTCCTGGCCTCAAGAAGATGGATAAAGCATCTGTGTTGGGAGATGCAATAAAATATATGAAACAACTTCAAGCACGATTGAAAAGTCTTGAGGAACAAGTTGAAGACAACAAAAAAGCTGGATCCGCAGTTCAAGTTAAAAGATCTGTTATCTTCACTGATAATAATGACCATGATGAAAACAACAAGAAGACACTTCTTCCTGAAATCGAAGTTAGAGTTTCAAGCAAAGATGTACTCATCAAGATTCAATGTGATAAACAAAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCATTGTCCAAAGTAGTAACTTTTTGCCCTTTGGAAACAACATTGTTGATGTAACTATTGTTGCTCAGATGAACAAGGAAAACTGTGTGACTGCAAAGGATCTCCTAGGAAGCATACGACAGGCTTTGATCATTTGA 954 0.3868 MMEIMSPIYLPELGMDDLNFLHQYPMDSLASDAFDNLGFHFDNNYETVPNCFPVETHHHPDDNYVAQTRPTKKIKTSINTSSYSSTPQLISFEHSNATPIASNEEFYSLDYSDVKPKIEKGCSENKDFAANYDNRANQTRNRTQAQEHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAIKYMKQLQARLKSLEEQVEDNKKAGSAVQVKRSVIFTDNNDHDENNKKTLLPEIEVRVSSKDVLIKIQCDKQSGRAATVLGQLENLNLIVQSSNFLPFGNNIVDVTIVAQMNKENCVTAKDLLGSIRQALII 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00680 317 PANTHER BHLH TRANSCRIPTION FACTOR 25 315 - -
Trre10g00680 317 CDD bHLH_AtNAI1_like 145 217 - -
Trre10g00680 317 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Trre10g00680 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 206 IPR036638 GO:0046983
Trre10g00680 317 Coils Coil 182 209 - -
Trre10g00680 317 SMART finulus 149 198 IPR011598 GO:0046983
Trre10g00680 317 Gene3D - 133 209 IPR036638 GO:0046983
Trre10g00680 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00680 Trre-Chr10 4885180 4887667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00680 2 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.693 1.51e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g00680 HLH 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00680 - - cam:101507557 344.354