Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00679 ATGACATCAACTGATGAGTCATGGACAACTTGGTTATGTGATTTGGAACTAGAAGATTATAATTTAATCAATAACATTAACATAGCTACTTTGCAAGAAGAACCTGAAAACTTGCAACAAACTTTCTCTAGTGGTAGCCATTGTTCTCAAACAACCTCAAGCACTATGAGTAATTCCTCAAGTGATGTTGTTAACAGCTTTGAGGAAAGGCCTACAAAGATACTCAAGACTAACCCTTCAAACACAGGGTACCCTACACAAAAGAAAGATTCTAATTCCCATTCATATATTCTTTGTTTTAACAATGAAAATCCAGAAACAGAACCAATATTGAACATTGATTCAACCTTGAAAAACAAAGCCAAGATTTTCAATCATGATGGGAAATCTTTAACCTCAAAAGGGGTATCAGAAAATCAAAAAAAGGAACCTAAACGCAATATTCAAGAAAGCAAAAAGACTGATTCAGTTACAAGAAATGCTCAAGATCACATAATTGCTGAGAGAAAAAGAAGAGAAAAAATTAGTCAACAGTTCATAGCTCTTTCAGCACTCATTCCTGACTTAAAAAAGATGGATAAAGCTTCTGTATTAGGAGATGCTATAACCCATGTGAAACAGCTTCAAGAACAAGTGAAGGTACTAGAAGAAAAGAACCAAAGGAAAAATGTAGAATCTGTGGTATATGTTGAGAAGACAAAGTCATGTTCTTCAGATGAAGATGTCTCAGACAACACTTCATCAAATTCTGGTAGTACATTGCAATTTGGAACTACCAAACTTGACATAACCATCATAGCCGAGATGGAAGAGGAGTTCAGTCTAAGTGTGCAGGAGCTAGCAAGAAACCTTCAAGTTGGACTCTTGCAATTCATGTCATAG 882 0.3537 MTSTDESWTTWLCDLELEDYNLINNINIATLQEEPENLQQTFSSGSHCSQTTSSTMSNSSSDVVNSFEERPTKILKTNPSNTGYPTQKKDSNSHSYILCFNNENPETEPILNIDSTLKNKAKIFNHDGKSLTSKGVSENQKKEPKRNIQESKKTDSVTRNAQDHIIAERKRREKISQQFIALSALIPDLKKMDKASVLGDAITHVKQLQEQVKVLEEKNQRKNVESVVYVEKTKSCSSDEDVSDNTSSNSGSTLQFGTTKLDITIIAEMEEEFSLSVQELARNLQVGLLQFMS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00679 293 SMART finulus 165 214 IPR011598 GO:0046983
Trre10g00679 293 MobiDBLite consensus disorder prediction 136 161 - -
Trre10g00679 293 PANTHER BHLH TRANSCRIPTION FACTOR 251 291 - -
Trre10g00679 293 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Trre10g00679 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 226 IPR036638 GO:0046983
Trre10g00679 293 Gene3D - 157 229 IPR036638 GO:0046983
Trre10g00679 293 Coils Coil 198 225 - -
Trre10g00679 293 MobiDBLite consensus disorder prediction 128 161 - -
Trre10g00679 293 MobiDBLite consensus disorder prediction 41 63 - -
Trre10g00679 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00679 Trre-Chr10 4857044 4864273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00679 9 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.277 1.20e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g00679 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00679 - - tpra:123911002 450.284