Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00678 ATGGAAATTTCAGCTAACAAAATGACATCAACTGATGAGTCATGGACAACTTGGTTATGTGATTTGGAACTAGAAGATTATAATTTAATCAATAACATTAACATAGCTACTTTGCAAGAAGAACCTGAAAACTTGCAACAAACTTTCTCTAGTGGTAGCCATTGTTCTCAAACAACCTCAAGCACTATGAGTAATTCCTCAAGTGATGTTGTTAACAGCTTTGAGGAAAGGCCTACAAAGATACTCAAGACTAACCCTTCAAACACAGGGTACCCTACACAAAAGAAAGATTCTAATTCCCATTCATATATTCTTTGTTTTAACAATGAAAATCCAGAAACAGAACCAATATTGAACATTGATTCAACCTTGAAAAACAAAGCCAAGATTTTCAATCATGATGGGAAATCTTTAACCTCAAAAGGGGTATCAGAAAATCAAAAAAAGGAACCTAAACGCAATATTCAAGAAAGCAAAAAGACTGATTCAGTTACAAGAAATGCTCAAGATCACATAATTGCTGAGAGAAAAAGAAGAGAAAAAATTAGTCAACAGTTCATAGCTCTTTCAGCACTCATTCCTGACTTAAAAAAGATGGATAAAGCTTCTGTATTAGGAGATGCTATAACCCATGTGAAACAGCTTCAAGAACAAGTGAAGGGTGTGTTGATGAATATAATCCAAGAGATAGAGAATCTTCATCTATGTGTCACAAGTAGTAGTACATTGCAATTTGGAACTACCAAACTTGACATAACCATCATAGCCGAGATGGAAGAGGAGTTCAGTCTAAGTGTGCAGGAGCTAGCAAGAAACCTTCAAGTTGGACTCTTGCAATTCATGTCATAG 849 0.3522 MEISANKMTSTDESWTTWLCDLELEDYNLINNINIATLQEEPENLQQTFSSGSHCSQTTSSTMSNSSSDVVNSFEERPTKILKTNPSNTGYPTQKKDSNSHSYILCFNNENPETEPILNIDSTLKNKAKIFNHDGKSLTSKGVSENQKKEPKRNIQESKKTDSVTRNAQDHIIAERKRREKISQQFIALSALIPDLKKMDKASVLGDAITHVKQLQEQVKGVLMNIIQEIENLHLCVTSSSTLQFGTTKLDITIIAEMEEEFSLSVQELARNLQVGLLQFMS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00678 282 MobiDBLite consensus disorder prediction 135 168 - -
Trre10g00678 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Trre10g00678 282 PANTHER BHLH TRANSCRIPTION FACTOR 220 280 - -
Trre10g00678 282 MobiDBLite consensus disorder prediction 48 97 - -
Trre10g00678 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 226 IPR036638 GO:0046983
Trre10g00678 282 Gene3D - 161 222 IPR036638 GO:0046983
Trre10g00678 282 MobiDBLite consensus disorder prediction 143 168 - -
Trre10g00678 282 SMART finulus 172 221 IPR011598 GO:0046983
Trre10g00678 282 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00678 Trre-Chr10 4857023 4864273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00678 212 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 40.909 4.46e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g00678 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00678 - - tpra:123911002 342.813