Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00677 ATGCTCTTTGAAGAAATGGACATAGAGGATTGTGATAATTTGTTTCAACAATGTGAACAAAATTTATTTGGTGATGAAGAGTTTCTTACACATGACATAGCAAGTGTTCTTCAACAAGATGAAATTTTACTAGAACAACAACCTTTGTTATCTTCTGAAAGTAGCTATTATTTAGAAAGACCAAATAAAAAGTTGAAAACAAACACTGTTTTGCAAGATGTTTCCCCTGTTTCTTCTCCTTCTTCTATTACTTCTCAGATTTTGTCATTTGATTGTACCTTAAACACATCAAAACAGAACCAGGTTGTTCCATTGTCACCACAAAAACATGTACAACTACCTCAAAATCGAAAAGGGTCATTGCAAAACAAAAACGTTGGTGAAACTAAGAATTCACAAGGTCAAGGGACTAAGAGGTCAGGGGCACATAATCAGGACCATATCTTAGCTGAGAGAAAGAGAAGAGAGAAACTTAGCCAATGCTTAATTGCTTTAGCTGCTCTCATTCCTGGTTTGAAGAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAGTAAAGTACGTGAAAGAGCTTCAAGAACGTTTGAGGGTATTAGAGGAAAAGAATAAGAATAGTACAAGTCCTGTTGAGTGTGTAGTGACGGTCAATGGACCGCAGCTAAGTTACGATTCAACAAGCAGTGATGAATCTGAAGCTGATCAAGCTGGTAGTGGTAACACTAATAGTAATAATGATGAAGTTCTTGGTCCCCATGTGGAAGCAAGAATCTTGGATAAGGACGTACTCATTAGGATTCACTGCAAAAAGCAAAAGGGTCTTTTGCTTAAAGTTTTGTTTGAGATTCAAAAGCTTCATCTCTCTGTTGTTAATAGCAGTGTCCTACCTTTTGGGAATTCTATCCTTGACATAACCATCGTTGCTCAGATGGGAACAGGGTACAAGTTGACAAGAGATGCCCTTATAAAAAGCCTACGCGTGGCTGCATTAAGATCCATGTCCAAGTAG 1005 0.3801 MLFEEMDIEDCDNLFQQCEQNLFGDEEFLTHDIASVLQQDEILLEQQPLLSSESSYYLERPNKKLKTNTVLQDVSPVSSPSSITSQILSFDCTLNTSKQNQVVPLSPQKHVQLPQNRKGSLQNKNVGETKNSQGQGTKRSGAHNQDHILAERKRREKLSQCLIALAALIPGLKKMDKASVLGDAVKYVKELQERLRVLEEKNKNSTSPVECVVTVNGPQLSYDSTSSDESEADQAGSGNTNSNNDEVLGPHVEARILDKDVLIRIHCKKQKGLLLKVLFEIQKLHLSVVNSSVLPFGNSILDITIVAQMGTGYKLTRDALIKSLRVAALRSMSK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00677 334 SMART finulus 148 197 IPR011598 GO:0046983
Trre10g00677 334 MobiDBLite consensus disorder prediction 105 142 - -
Trre10g00677 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 204 IPR036638 GO:0046983
Trre10g00677 334 MobiDBLite consensus disorder prediction 222 247 - -
Trre10g00677 334 Pfam Helix-loop-helix DNA-binding domain 146 192 IPR011598 GO:0046983
Trre10g00677 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Trre10g00677 334 PANTHER BHLH TRANSCRIPTION FACTOR 48 329 - -
Trre10g00677 334 MobiDBLite consensus disorder prediction 105 145 - -
Trre10g00677 334 Coils Coil 181 201 - -
Trre10g00677 334 Gene3D - 134 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00677 Trre-Chr10 4838612 4843032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00677 60 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.714 1.28e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g00677 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00677 - - tpra:123910022 457.988