Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00676 ATGGATAAATTAAACACATCTTCAAACGCATCATCAACTAGCTGGTTATCTAATATGCTCTTTGAAGAAATGGACATAGAGGATTGTGATAATTTGTTTCAACAATGTGAACAAAATTTATTTGGTGATGAAGAGTTTCTTACACATGACATAGCAAGTGTTCTTCAACAAGATGAAATTTTACTAGAACAACAACCTTTGTTATCTTCTGAAAGTAGCTATTATTTAGAAAGACCAAATAAAAAGTTGAAAACAAACACTGTTTTGCAAGATGTTTCCCCTGTTTCTTCTCCTTCTTCTATTACTTCTCAGATTTTGTCATTTGATTGTACCTTAAACACATCAAAACAGAACCAGGTTGTTCCATTGTCACCACAAAAACATGTACAACTACCTCAAAATCGAAAAGGGTCATTGCAAAACAAAAACGTTGGTGAAACTAAGAATTCACAAGGTCAAGGGACTAAGAGGTCAGGGGCACATAATCAGGACCATATCTTAGCTGAGAGAAAGAGAAGAGAGAAACTTAGCCAATGCTTAATTGCTTTAGCTGCTCTCATTCCTGGTTTGAAGAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAGTAAAGTACGTGAAAGAGCTTCAAGAACGTTTGAGGGTATTAGAGGAAAAGAATAAGAATAGTACAAGTCCTGTTGAGTGTGTAGTGACGGTCAATGGACCGCAGCTAAGTTACGATTCAACAAGCAGTGATGAATCTGAAGCTGATCAAGCTGGTAGTGGTAACACTAATAGTAATAATGATGAAGTTCTTGGTCCCCATGTGGAAGCAAGAATCTTGGATAAGGACGTACTCATTAGGATTCACTGCAAAAAGCAAAAGGGTCTTTTGCTTAAAGTTTTGTTTGAGATTCAAAAGCTTCATCTCTCTGTTGTTAATAGCAGTGTCCTACCTTTTGGGAATTCTATCCTTGACATAACCATCGTTGCTCAGATGGGAACAGGGTACAAGTTGACAAGAGATGCCCTTATAAAAAGCCTACGCGTGGCTGCATTAAGATCCATGTCCAAGTAG 1059 0.3768 MDKLNTSSNASSTSWLSNMLFEEMDIEDCDNLFQQCEQNLFGDEEFLTHDIASVLQQDEILLEQQPLLSSESSYYLERPNKKLKTNTVLQDVSPVSSPSSITSQILSFDCTLNTSKQNQVVPLSPQKHVQLPQNRKGSLQNKNVGETKNSQGQGTKRSGAHNQDHILAERKRREKLSQCLIALAALIPGLKKMDKASVLGDAVKYVKELQERLRVLEEKNKNSTSPVECVVTVNGPQLSYDSTSSDESEADQAGSGNTNSNNDEVLGPHVEARILDKDVLIRIHCKKQKGLLLKVLFEIQKLHLSVVNSSVLPFGNSILDITIVAQMGTGYKLTRDALIKSLRVAALRSMSK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00676 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 222 IPR036638 GO:0046983
Trre10g00676 352 SMART finulus 166 215 IPR011598 GO:0046983
Trre10g00676 352 MobiDBLite consensus disorder prediction 240 265 - -
Trre10g00676 352 MobiDBLite consensus disorder prediction 123 163 - -
Trre10g00676 352 PANTHER BHLH TRANSCRIPTION FACTOR 32 347 - -
Trre10g00676 352 Gene3D - 152 225 IPR036638 GO:0046983
Trre10g00676 352 Coils Coil 199 219 - -
Trre10g00676 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Trre10g00676 352 Pfam Helix-loop-helix DNA-binding domain 164 210 IPR011598 GO:0046983
Trre10g00676 352 MobiDBLite consensus disorder prediction 123 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00676 Trre-Chr10 4838558 4843032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00676 14 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.176 1.42e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g00676 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00676 - - tpra:123910022 488.419