Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00669 ATGGCTACAGATATTGGCCTTCTTTCCAATATGACTCAGATCCAAAAATCTTCACAATCACAATCCCAACAACACCAACCAAACCCTAACTCAAACACCACCATAGCCTCACAATCACCATCAACTTGGATGTGGAACCCTAAACACCACCAACAACAACATCAAAGAGAACAAGAAGAAGATGAAGATTCATGGGAGGTAAGAGCTTTTGCTGAAGACACAAGGAACATCATGAACACAACATGGCCACCAAGGTCTTACTCTTGTACTTTTTGTCGAAGAGAGTTCCGGTCAGCACAGGCTCTCGGCGGTCACATGAATGTTCACCGCCGAGACCGTGCTCGCCTCCATCAAAATCAACCACCATTAAATTCATCCTCTCATCATCATCCTTCGTCGTCGCCGTTCATAAATATCCCTCCTCAAGAGCTTGTTGCAAATGCTGGATTGTGTTTTCTTTACCATTTACCAAACCCTAATAATAATAATGTTATTGCTTCTTCTTTCAATGGTTCTAATGGAGAATCTCCTTCAACCCTTCTTTCTATTTCATCATCAACATCTTATCCACCAAATAACTTGATGATGCAAATGCAAACTTGTTCTCCTCAATCTTTTAATTTTCAGGCTAATTCAGCTAGGATGATCAATCATAACATTTCTTCTTTTTCTAGCAAAGTGGATCAACAAACTGCTATTTGCACCTCCATTGATGATAATGGTCATGGAATTGAAGAGCTTGATCTTGAGCTCCGATTGGGGAACAAGCCAGCACCAACATGA 783 0.4087 MATDIGLLSNMTQIQKSSQSQSQQHQPNPNSNTTIASQSPSTWMWNPKHHQQQHQREQEEDEDSWEVRAFAEDTRNIMNTTWPPRSYSCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSSHHHPSSSPFINIPPQELVANAGLCFLYHLPNPNNNNVIASSFNGSNGESPSTLLSISSSTSYPPNNLMMQMQTCSPQSFNFQANSARMINHNISSFSSKVDQQTAICTSIDDNGHGIEELDLELRLGNKPAPT 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00669 260 SUPERFAMILY beta-beta-alpha zinc fingers 84 114 IPR036236 -
Trre10g00669 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Trre10g00669 260 Pfam C2H2-type zinc finger 87 111 - -
Trre10g00669 260 MobiDBLite consensus disorder prediction 1 49 - -
Trre10g00669 260 MobiDBLite consensus disorder prediction 1 65 - -
Trre10g00669 260 Gene3D Classic Zinc Finger 77 135 - -
Trre10g00669 260 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Trre10g00669 260 PANTHER OS07G0101800 PROTEIN 59 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00669 Trre-Chr10 4760962 4761744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00669 41 257 C2H2 Transcription Factor Family AT4G17810 35.909 3.20e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g00669 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00669 - - tpra:123908941 412.149