Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00666 ATGGAATCGCGTGAAGCAAACCATGAGAATGAACAACCACAACAACAACCATCCCCAACATCACCACCACTTCCTCAGCCTCAACTTTCTCATCACAACCTTCAAACAGCAACTATGGTTATGTCTGGTCCCAATCCGTTTACAAACAGTACTGTTGCTACGACAATGATGACACCTGTCACTGCTCAGTTTCCATTGCTCAACATGAACACTAACCATTCTCCTCATTCTGATGGTTTTAACAACAACATTAATAATACTTTAACTGCACCTCCAGCTGCTCATTCCACGGCCTTGATGCCATGCATGACGCCGGTGGTGGGAGATTCTTCCTCCAACTTTCCCTCCGACTCTGTTTCGGTTAAGAAAAAGAGGGGGAGGCCAAGGAAGTATTTTGCTAAACATGAGGTTGATTCGGGCTTGGGCTCTAGCTCAGGCTCAGGCTCAGGCTCAGGTCAAGCTCAAGCTGCTGCTGTTGCTCCTCCTCCTCCTTCTCCTCCCGCTGCTGCTACTCCACTTCCTGACTCTTTGATGAAGAGTACTAGAGGAAGAGGAAGGCCTCGTGGATCTTTTAATAAGAAGAACGATGTTGAAGTCCATGGACTTGCTGGCACATGTTTCTCTCCGTATGTGATCATTGTGAATCGTGGAGAGGATATTATTGCAAAAGTTACCTCTGCTTGTTACGGAGGACCTAATTCCGAGGTCTGCATTCTTTCTGTGCACGGTTATGTTAGCACCGCTGCGCTTCATGTGCCCGGGAATATTTTAACTTATGAGGGAGGACCATATGAAATTTTATCCCTTTCAGGCACCTTACTACCTGGGAACAATGGCAGTAAAAGAATGGGTAGCTGGACGGTATCTCTAGGGGGAGGTCCTAAGGCACAAATTTGGGGAGGTGTGGTTGCTGATAAGCTTATCGCGGCATCGTCTGTCAAGGTGATATTGGGTTGTTTTACTCTGGATGGAAAAAAGGCTAGCTTGAATAACCAGAATTCTCAGCCGCCTCCGGTGCCATTCGAATTTGCTGCTTCTGGGAGTACTCCAACTCCAACCAGTGCTACATCACAAGTGCATTATTTATCTGAGTCCTCTGGAGACAATGAGGAGATTCCTTTTGATCAGGGAGGACCATCTGAAGTCTACAACGATGATGATCAGCTCATTCCCAACCTGACGATGTACCAGCAAATGTGGGATTACCATTATCAGCCGTGA 1221 0.4685 MESREANHENEQPQQQPSPTSPPLPQPQLSHHNLQTATMVMSGPNPFTNSTVATTMMTPVTAQFPLLNMNTNHSPHSDGFNNNINNTLTAPPAAHSTALMPCMTPVVGDSSSNFPSDSVSVKKKRGRPRKYFAKHEVDSGLGSSSGSGSGSGQAQAAAVAPPPPSPPAAATPLPDSLMKSTRGRGRPRGSFNKKNDVEVHGLAGTCFSPYVIIVNRGEDIIAKVTSACYGGPNSEVCILSVHGYVSTAALHVPGNILTYEGGPYEILSLSGTLLPGNNGSKRMGSWTVSLGGGPKAQIWGGVVADKLIAASSVKVILGCFTLDGKKASLNNQNSQPPPVPFEFAASGSTPTPTSATSQVHYLSESSGDNEEIPFDQGGPSEVYNDDDQLIPNLTMYQQMWDYHYQP 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00666 406 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 368 IPR039605 GO:0003680
Trre10g00666 406 CDD DUF296 209 318 IPR005175 -
Trre10g00666 406 SUPERFAMILY AF0104/ALDC/Ptd012-like 206 321 - -
Trre10g00666 406 ProSiteProfiles PPC domain profile profile. 204 341 IPR005175 -
Trre10g00666 406 MobiDBLite consensus disorder prediction 140 154 - -
Trre10g00666 406 Pfam Plants and Prokaryotes Conserved (PCC) domain 209 320 IPR005175 -
Trre10g00666 406 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Trre10g00666 406 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Trre10g00666 406 MobiDBLite consensus disorder prediction 346 380 - -
Trre10g00666 406 Gene3D - 209 331 - -
Trre10g00666 406 MobiDBLite consensus disorder prediction 346 365 - -
Trre10g00666 406 MobiDBLite consensus disorder prediction 107 194 - -
Trre10g00666 406 MobiDBLite consensus disorder prediction 1 30 - -
Trre10g00666 406 Pfam AT hook motif 122 132 IPR017956 GO:0003677
Trre10g00666 406 Pfam AT hook motif 181 192 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00666 Trre-Chr10 4739967 4742219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00666 121 355 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 34.510 1.32e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00666 - - tpra:123905235 400.979