Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00665 ATGGAATCGCGTGAAGCAAACCATGAGAATGAACAACCACAACAACAACCATCCCCAACATCACCACCACTTCCTCAGCCTCAACTTTCTCATCACAACCTTCAAACAGCAACTATGGTTATGTCTGGTCCCAATCCGTTTACAAACAGTACTGTTGCTACGACAATGATGACACCTGTCACTGCTCAGTTTCCATTGCTCAACATGAACACTAACCATTCTCCTCATTCTGATGGTTTTAACAACAACATTAATAATACTTTAACTGCACCTCCAGCTGCTCATTCCACGGCCTTGATGCCATGCATGACGCCGGTGGTGGGAGATTCTTCCTCCAACTTTCCCTCCGACTCTGTTTCGGTTAAGAAAAAGAGGGGGAGGCCAAGGAAGTATTTTGCTAAACATGAGGTTGATTCGGGCTTGGGCTCTAGCTCAGGCTCAGGCTCAGGCTCAGGTCAAGCTCAAGCTGCTGCTGTTGCTCCTCCTCCTCCTTCTCCTCCCGCTGCTGCTACTCCACTTCCTGACTCTTTGATGAAGAGTACTAGAGGAAGAGGAAGGCCTCGTGGATCTTTTAATAAGAAGAACGATGTTGAAGTCCATGGTGGACTTGCTGGCACATGTTTCTCTCCGTATGTGATCATTGTGAATCGTGGAGAGGATATTATTGCAAAAGTTACCTCTGCTTGTTACGGAGGACCTAATTCCGAGGTCTGCATTCTTTCTGTGCACGGTTATGTTAGCACCGCTGCGCTTCATGTGCCCGGGAATATTTTAACTTATGAGGGAGGACCATATGAAATTTTATCCCTTTCAGGCACCTTACTACCTGGGAACAATGGCAGTAAAAGAATGGGTAGCTGGACGGTATCTCTAGGGGGAGGTCCTAAGGCACAAATTTGGGGAGGTGTGGTTGCTGATAAGCTTATCGCGGCATCGTCTGTCAAGGTGATATTGGGTTGTTTTACTCTGGATGGAAAAAAGGCTAGCTTGAATAACCAGAATTCTCAGCCGCCTCCGGTGCCATTCGAATTTGCTGCTTCTGGGAGTACTCCAACTCCAACCAGTGCTACATCACAAGTGCATTATTTATCTGAGTCCTCTGGAGACAATGAGGAGATTCCTTTTGATCAGGGAGGACCATCTGAAGTCTACAACGATGATGATCAGCTCATTCCCAACCTGACGATGTACCAGCAAATGTGGGATTACCATTATCAGCCGTGA 1224 0.469 MESREANHENEQPQQQPSPTSPPLPQPQLSHHNLQTATMVMSGPNPFTNSTVATTMMTPVTAQFPLLNMNTNHSPHSDGFNNNINNTLTAPPAAHSTALMPCMTPVVGDSSSNFPSDSVSVKKKRGRPRKYFAKHEVDSGLGSSSGSGSGSGQAQAAAVAPPPPSPPAAATPLPDSLMKSTRGRGRPRGSFNKKNDVEVHGGLAGTCFSPYVIIVNRGEDIIAKVTSACYGGPNSEVCILSVHGYVSTAALHVPGNILTYEGGPYEILSLSGTLLPGNNGSKRMGSWTVSLGGGPKAQIWGGVVADKLIAASSVKVILGCFTLDGKKASLNNQNSQPPPVPFEFAASGSTPTPTSATSQVHYLSESSGDNEEIPFDQGGPSEVYNDDDQLIPNLTMYQQMWDYHYQP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00665 407 MobiDBLite consensus disorder prediction 347 366 - -
Trre10g00665 407 Pfam AT hook motif 122 132 IPR017956 GO:0003677
Trre10g00665 407 Pfam AT hook motif 181 192 IPR017956 GO:0003677
Trre10g00665 407 CDD DUF296 210 319 IPR005175 -
Trre10g00665 407 ProSiteProfiles PPC domain profile profile. 205 342 IPR005175 -
Trre10g00665 407 MobiDBLite consensus disorder prediction 107 196 - -
Trre10g00665 407 SUPERFAMILY AF0104/ALDC/Ptd012-like 207 322 - -
Trre10g00665 407 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 369 IPR039605 GO:0003680
Trre10g00665 407 MobiDBLite consensus disorder prediction 140 154 - -
Trre10g00665 407 Gene3D - 210 332 - -
Trre10g00665 407 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Trre10g00665 407 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Trre10g00665 407 Pfam Plants and Prokaryotes Conserved (PCC) domain 210 321 IPR005175 -
Trre10g00665 407 MobiDBLite consensus disorder prediction 1 30 - -
Trre10g00665 407 MobiDBLite consensus disorder prediction 347 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00665 Trre-Chr10 4739967 4742219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00665 121 356 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 34.902 1.32e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00665 - - tpra:123905235 400.208