Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00659 ATGGGAGGGACTTCACTTCCTCCGGGTTTTCGATTCCATCCAACTGATGAAGAACTGATAGGATATTACCTAAAGAGAAAAGTTGAGGGACTTGAAATTGAGCTTGAAGTTATACCTGTGATTGATTTCTACAAATTTGATCCATGGGAGTTGCCTGAGAAATCTTTTCTACCAAAAAGAGACATGGAATGGTTTTTCTTCTGTCCACGAGATCGCAAGTACCCAAATGGATCAAGGACGAATAGAGCCACCAAAGCTGGCTACTGGAAAGCCACTGGAAAAGACAGGAAGGTTGTGTGTGAGCCTAGTCCATTCATTTCCACTGAGACTGTCACAGGTTACCGCAAGACCCTGGTTTTCTACTGTGGAAGAGCTCCTTTAGGTGATCGAACCAATTGGATCATGCATGAATATCGCCTTAACGATGATCCTAGCCAAGGATCAGAGGGTGTTTTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGGCAAATGATTCCCAAGGACAAGGAGGAAAGAGGGTTAGAGTTAATGACGGGAACAATTCCATTTCGACCAACGGGAATGAGGTTTCTTGTCAGGCAAGTCAGCTGTGCAGTGGTAATGAGAGTCACTTTTCAAGTCCTATTGATTTCCCATGCAATTTGCCTAATATGGATGGATTGGACCAAACTTCCTCTGATACCAATCCTTCAACCTTCTGGCTCTCTCCTGATATGATTCTTGATTCTTCGAAGGATTACTCTCAAATGCAAGTACAGGATGTTGAGGGATGTTTTCAACCGCAACATGACTTATCGAGTACAATGACACCTTGGCAATCATTTGAACATACCGAAATTTCACCATGTTCGTCCTACTCAAATTTTAATGCAGAAATTGAATTTTCTGATGCTCTTAGTCGAATTGGTTGTGTGTCACCTTACTTAGGACAAGGAAGCTTCATGGACTTGCCTTATGAATGCTATGATCAAATTCATTCATTCACAAACCCAAATCAATTCTGA 1008 0.4167 MGGTSLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCEPSPFISTETVTGYRKTLVFYCGRAPLGDRTNWIMHEYRLNDDPSQGSEGVFALCRVIKKNEKANDSQGQGGKRVRVNDGNNSISTNGNEVSCQASQLCSGNESHFSSPIDFPCNLPNMDGLDQTSSDTNPSTFWLSPDMILDSSKDYSQMQVQDVEGCFQPQHDLSSTMTPWQSFEHTEISPCSSYSNFNAEIEFSDALSRIGCVSPYLGQGSFMDLPYECYDQIHSFTNPNQF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00659 335 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Trre10g00659 335 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Trre10g00659 335 FunFam Nac domain-containing protein 86 15 163 - -
Trre10g00659 335 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Trre10g00659 335 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Trre10g00659 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00659 Trre-Chr10 4704900 4706672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00659 1 295 NAC Transcription Factor Family AT4G17980 54.667 2.51e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g00659 NAM 6.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00659 - - adu:107487585 449.899