Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00646 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAGCAAAGCTTGAATCTATGGACTATAATGTTTCTACCTTCTACAACGAGAATGAAGCCTTGTCAGCGATCTCAAGTAGTTCCAAAGGTTTCCATGTTGCCGTAGTGGAGGTGAGTATAAGCTGCCCTCATGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCAACCATTATGACTTCAAACAGTCAATGCATAAACACAATGATGAAGTGCATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCCGAGGACAAACTAAAAAACATTTGGCAGCATGTGGTTCACAAGGCTTTCAATGGTGAGTCAAGTGCTCTGTCTGAATCACTAAAACCTGTCAAAGAATCGGTAGAGTCTATGTTGCAGCTCGAAACAGAAAACAAACTACATGAGAGTACAATATTAATAGATGTAGAGAAGTTGTCCAAGTTTAGTGATAATGAACACGAGCATTCTGCGGCAAGTGACAAATATCCGGCTCCTTCGACCCCTCAGTTAAAACAAGGTGCGAGGTTAGTGGACGATGGGGACTGCCACGAGCAAACTAATTGCTCAATAGAAAAAGAAAGTGGGGAACACGATGGTGGTGAATGTAAATTTGTCGAAACTTCATGTGAGAATGTGAACACGGAAAGTTCTCCTCAACCAACGAAACCTCTGATTAAGGAGGAAGATGATTTGGCCAATGGTTCGAAGGGTGAGAGTAGTGTTTTAACAAATCCACAAAGTAAACAGTTACTCGGTGACACTGGTGGTAATGCATCTTCGAATGAAACCAGCAGCCCTAAGGATTCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTCGAACAATTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGAGGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGATCATGCACACGGACGAAGATCGAAAATGGCCAAATCAAAGAGATCCAATGCAAAGGAACTATTGTAAACTGCAAAGACCAATCATGGCCTATCCACCATATCATTCTAATCACACCTTTCCTCCAGCTCCTGTATATCCTATGTGGGGACAACCTGGAAGTCAAACAGCCGGTGTACCGATTTGGCCTCCGCCTGGTTATCCTCTATGGCAACAACCTGCAGAAAGTTGGCATTGGAAGCCTTATCCGGCGGTGCATGTAGATGCATGGGGTAACCCAATGTTGCCAATTCCTCAAACTCCTTGTTTACCTTACACTCAAAATATAGCTGGGTTGCATAATGCTAAAGCAGTGGATTATAGATTTGGCATGCCTCAAAATTCCTTTGAGCATTATCCGGCAGAAGAGGTAGTGGACAAGGTTGTGAAGGAGGCAATAAGCAAACCATGGCTACCATTACCAATAGGCCTAAAACCTCCTTCAATGGATAGTGTTTTGGATGAACTTACCAAACAAGGCATCCCTTTTAGCAAGAGCAAGGCCTCTAAACACTGCTGA 1662 0.4284 MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRAKLESMDYNVSTFYNENEALSAISSSSKGFHVAVVEVSISCPHGGFKFLENAKDLPTIMTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNGESSALSESLKPVKESVESMLQLETENKLHESTILIDVEKLSKFSDNEHEHSAASDKYPAPSTPQLKQGARLVDDGDCHEQTNCSIEKESGEHDGGECKFVETSCENVNTESSPQPTKPLIKEEDDLANGSKGESSVLTNPQSKQLLGDTGGNASSNETSSPKDSCENKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIMHTDEDRKWPNQRDPMQRNYCKLQRPIMAYPPYHSNHTFPPAPVYPMWGQPGSQTAGVPIWPPPGYPLWQQPAESWHWKPYPAVHVDAWGNPMLPIPQTPCLPYTQNIAGLHNAKAVDYRFGMPQNSFEHYPAEEVVDKVVKEAISKPWLPLPIGLKPPSMDSVLDELTKQGIPFSKSKASKHC 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00646 553 Gene3D - 18 146 - -
Trre10g00646 553 MobiDBLite consensus disorder prediction 183 205 - -
Trre10g00646 553 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Trre10g00646 553 MobiDBLite consensus disorder prediction 263 310 - -
Trre10g00646 553 Pfam Myb-like DNA-binding domain 314 363 IPR001005 -
Trre10g00646 553 NCBIfam myb-like DNA-binding domain, SHAQKYF class 311 366 IPR006447 GO:0003677
Trre10g00646 553 SUPERFAMILY CheY-like 16 134 IPR011006 -
Trre10g00646 553 FunFam Two-component response regulator-like APRR2 17 142 - -
Trre10g00646 553 SUPERFAMILY Homeodomain-like 310 368 IPR009057 -
Trre10g00646 553 FunFam Two-component response regulator 307 370 - -
Trre10g00646 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 308 367 IPR017930 -
Trre10g00646 553 MobiDBLite consensus disorder prediction 269 301 - -
Trre10g00646 553 Gene3D - 307 369 - -
Trre10g00646 553 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 543 IPR044825 GO:0003700|GO:0045893
Trre10g00646 553 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00646 Trre-Chr10 4603676 4608428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00646 1 542 Response Regulator Gene Family AT4G18020 49.040 2.01e-141 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre10g00646 Response_reg 3e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00646 - - gmx:100784905 868.226