Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00641 ATGAATTCCGAGCCACCAAGAGGAACGGTAGAATCAATGTCACTCTTTAATGGACATTCTGAACAAGAATTAGGGATTCCGTTGATGGAAAATGGAGGCTCTAGTATTCTTGCTCGTCCCATGGTTAAGCGCTGCGCAGTTTCTGCATTTCGTGATTTTCCAGAAGCATGTGATTTTCCAGATGCATTTCGTGAATTAGGGATTCTGTTGATGGAAAATGGAGGCTCTAGTATTCTTGCTCGTCCCATGGTTAAGCGCTGCGCAGTTTCTGCATTTCGTGATTTTCCAGAAGCATTTCGTGAGTTTCTGCTCGTCCCAAAATCACATGGTGTAAATGTTCCTCCTCTTGGTCGTGAGAATGACCCAATGGCCCGGAATAAAGTGAGGAATGCACTGCGCCTGTTCCAAGCTGTTTCTAGACAGCTTTTGCAGGAAGCGGAAGCAAAAGCGAAGTCAAACGAAAAAGAAAGAAGGAGGTTTGATTTACAAGCTGCGAAAATACTTAAGGAGAAAGGGAACTACGTTAATGAAGGGGGTAAGATTTTGGGTTCTGTCCCCGGGGTTGAAGTCGGTGATAAGTTTCATTACAGAATAGAGCTCAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGGCAGGGGGGAAATGTGATGAGCAGTGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCTTTGAAGAACAGCAGTGAGGAAAAGAATCCTGTTCGGGTGATACGAGGTTCGGAATCCGTGGATGGAAAAAGCAAGATATATGTTTATGATGGACTTTATCTTGTTGAGTCATGTTGGCAGGAAATGGGGTCACATGGAAAGCTGGTTTATAAGTTTCGCTTGCGAAGAATCCCAGGTCAACCGGAGCTTGCCTTGAAGGAAGTGAAGCAATCTAAAATAGGTTAA 930 0.443 MNSEPPRGTVESMSLFNGHSEQELGIPLMENGGSSILARPMVKRCAVSAFRDFPEACDFPDAFRELGILLMENGGSSILARPMVKRCAVSAFRDFPEAFREFLLVPKSHGVNVPPLGRENDPMARNKVRNALRLFQAVSRQLLQEAEAKAKSNEKERRRFDLQAAKILKEKGNYVNEGGKILGSVPGVEVGDKFHYRIELNIIGLHRQIQGGQGGNVMSSDKDPEDQKLERGNLALKNSSEEKNPVRVIRGSESVDGKSKIYVYDGLYLVESCWQEMGSHGKLVYKFRLRRIPGQPELALKEVKQSKIG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00641 309 SMART G9a_1 178 295 IPR003105 -
Trre10g00641 309 Coils Coil 143 163 - -
Trre10g00641 309 Gene3D - 213 308 IPR036987 -
Trre10g00641 309 SUPERFAMILY PUA domain-like 167 303 IPR015947 -
Trre10g00641 309 ProSiteProfiles YDG domain profile. 145 291 IPR003105 -
Trre10g00641 309 Pfam SAD/SRA domain 212 295 IPR003105 -
Trre10g00641 309 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 117 300 - -
Trre10g00641 309 Gene3D - 165 212 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00641 Trre-Chr10 4567587 4568749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00641 128 296 Su(var)3-9 homologs AT1G73100 36.364 2.41e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00641 K11420 - tpra:123908193 338.961