Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00631 ATGGGATACTTGTTGGGGAATGCTGTAACAATTGAAAAGGAAACAAACTATAAAATTCCCTTTGCGCATGGAATGAGACTCATATCCGATGAACTATACGAATCACTGCAAAAAACTTGTAATGGAGACTATGTGAATGTAGAGACCAGAAATGTTTTATGTTCCAGAGATATGAGTTCATTCAGCGAGGGAAGTATCGGGAAATGGCATCGTTGTACCTATAATATACCGAATAAGGCGGATATCCATAATACCTATGATTATCACGTAAACCTCAGTAGAAAAGGGATTCGTTCGCTAATTTACAGTGGAGATCATGACTTGTCGGTTCCATTCTTGTCAACACAAGCTTGA 354 0.3842 MGYLLGNAVTIEKETNYKIPFAHGMRLISDELYESLQKTCNGDYVNVETRNVLCSRDMSSFSEGSIGKWHRCTYNIPNKADIHNTYDYHVNLSRKGIRSLIYSGDHDLSVPFLSTQA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00631 117 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 2 117 IPR001563 GO:0004185|GO:0006508
Trre10g00631 117 Gene3D alpha/beta hydrolase 64 117 IPR029058 -
Trre10g00631 117 Gene3D alpha/beta hydrolase 1 63 IPR029058 -
Trre10g00631 117 SUPERFAMILY alpha/beta-Hydrolases 2 116 IPR029058 -
Trre10g00631 117 Pfam Serine carboxypeptidase 2 63 IPR001563 GO:0004185|GO:0006508
Trre10g00631 117 Pfam Serine carboxypeptidase 65 117 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00631 Trre-Chr10 4398567 4399417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00631 56 117 Calmodulin-binding Proteins AT2G22960 54.839 3.59e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00631 K16296 - gmx:100801015 153.68