Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00626 ATGAAGTGTTTTTTCTTCAAACATAAAAAGAAGAAAAATGATGTAGCAAAAAAATCTACCAGTGCTCATTCGTCACCAAGGAGTATAAAAGAGTTGTACAAAGAGAAAGAACACAATTTCAGAGTTTTTACTGTAAGAGAGCTTATAAATGCAACAAATGGTTTCAATAAAGTGCTGAAAATTGGAGAAGGAGGTTTTGGTAAAGTATATAGAGGAACAATTACTCCTGAAAATGGAATTGGTAACTCAATTGTTGTTGCAATTAAAAAACTCAACACTCGTGGATTTCAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTAGGAATTGTGAATCATCCAAATTTGGTTAAGCTTTTGGGATATTGTTCTGTTGATGGTCAGAATGGAATCCAACGGTTGTTAGTGTATGAGTTTATGCCTAATAGGAGTTTAGAAGATCATCTTTTCAGTCGTTCTTTACCTCTTTTGCCTTGGAAAACAAGATTACAGATCATGCTTGGTGCTGCTCAAGGATTACAGTATCTACATGAGGGATTGGAAATTCAGGTGATCTATAGAGATTTCAAATCATCAAATGTGTTGTTGGACAAGAATTTCCATCCTAAGCTCTCAGATTTTGGTCTTGCTAGGGAGGGCCCAACAGGTGACAACACTCATGTCTCTACTGCGGTAGTTGGGACAAGAGGCTATGCTGCACCAGAGTATATTGAAACAGGTCATCTAAAATCAAAGAGTGATGTTTGGAGTTTTGGTGTGGTATTGTATGAGATTCTCACAGGAAGACGAACAATTGAAAGAAATCTTCCGATAGCGGAACAAAAGCTTATAGAATGGGTTAAAAACTACCCTGCTGATACTAGCAGATTCAGTTTGATTATAGACCCTCGACTTGCGAAACAATATTCTCTTGATTCAGCTAGGAAAATTGCTAAGTTGGCAGATAGTTGCTTGAAGAAGAATGCTGAAGATAGGCCATCAATGAGTCAAGTAGTGGAAAGTTTGAAAGAAGCATTGGAATGTTCATTAAGTTAA 1038 0.369 MKCFFFKHKKKKNDVAKKSTSAHSSPRSIKELYKEKEHNFRVFTVRELINATNGFNKVLKIGEGGFGKVYRGTITPENGIGNSIVVAIKKLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGQNGIQRLLVYEFMPNRSLEDHLFSRSLPLLPWKTRLQIMLGAAQGLQYLHEGLEIQVIYRDFKSSNVLLDKNFHPKLSDFGLAREGPTGDNTHVSTAVVGTRGYAAPEYIETGHLKSKSDVWSFGVVLYEILTGRRTIERNLPIAEQKLIEWVKNYPADTSRFSLIIDPRLAKQYSLDSARKIAKLADSCLKKNAEDRPSMSQVVESLKEALECSLS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00626 345 PIRSF ILK 10 344 - -
Trre10g00626 345 Gene3D Phosphorylase Kinase; domain 1 34 140 - -
Trre10g00626 345 Pfam Protein tyrosine and serine/threonine kinase 60 336 IPR001245 GO:0004672|GO:0006468
Trre10g00626 345 CDD STKc_IRAK 61 338 - -
Trre10g00626 345 PANTHER OS01G0588500 PROTEIN-RELATED 19 338 - -
Trre10g00626 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Trre10g00626 345 SUPERFAMILY Protein kinase-like (PK-like) 37 336 IPR011009 -
Trre10g00626 345 ProSitePatterns Protein kinases ATP-binding region signature. 61 90 IPR017441 GO:0005524
Trre10g00626 345 Gene3D Transferase(Phosphotransferase) domain 1 141 343 - -
Trre10g00626 345 FunFam PTI1-like tyrosine-protein kinase 3 141 343 - -
Trre10g00626 345 ProSiteProfiles Protein kinase domain profile. 55 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00626 Trre-Chr10 4295322 4297788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00626 1 336 Glycoside Hydrolase AT3G07070 42.582 1.47e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre10g00626 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00626 - - gmx:100305390 546.584