Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00620 ATGGAGAAGCAACGTTACGAGATAGTGAATCAAAAGCTTGGTTCTGGCAACTATGGTGTCACTAAGTTGGCCAAAAACACCAAAACAGGAGAACTTGTAGCTATCAAATACATTCCAAGAGGACATAAGATTGATGAGAATGTTGAAAGAGAGATAGTTAATCATAGATCTTTAAGCCATCCACATATCATCAAATTCAAAGAGGTGTTTGTGACACCAACACATTTAGCTATTGTTCTTGAGTATGCTGCTGGCGGTGAACTTTTTACTAGGTTGCGCTCTGCCGGTCGATTTAGTGAAATTGAGGCAAGATATTTCTTTCAACAAGTAATATCTGGAGTCTACTACCTTCATTCCATGCAAATTTGCCATAGGGACTTGAAATTGGAGAACACTCTATTGGATGGAAGTCCAGCCCCTAGACTCAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTACTGCACTCTCAACCCAAATCAATGGTTGGAACTCTTATATACAATGCACCAGAGGTTTTGGCTAGACGGGAGTATGATGAAAAGATTGCAGATGTTTGGTCATGTGGTGTTATTCTCTATGTCATGTTAGTTGGAAAATACCCATTTGATGTTGATGATCGAAATGATCCTAAATATTCCACAAAGGTTATGAAGAAAATAACGAATGTTCAATACTCCATACCTGAGTATGTACATATATCTGCGGAGTGTAGGCAACTGCTCTCTAGTATATTTGTTGCCAATCCAGCTAAGAGGATCACAATCTCCGCCATAAAGCAACACCCTTGGTTTTTGAAGCATTTGCCTAGAGAAGTTAGTGAAGCTGATAAAAAATGTTACAAAGAAACACCAAAAGACCAATTATTATGCCAACAAAGTGTGGAAGAAATCTTACGGATTGTTCAAGAAGCAAAATCAACACCTAGACCAAGTTCATCGGAATTTATGGGAAATTTCATTGGGAACGTTGAAGAGGAGTGA 984 0.3852 MEKQRYEIVNQKLGSGNYGVTKLAKNTKTGELVAIKYIPRGHKIDENVEREIVNHRSLSHPHIIKFKEVFVTPTHLAIVLEYAAGGELFTRLRSAGRFSEIEARYFFQQVISGVYYLHSMQICHRDLKLENTLLDGSPAPRLKICDFGFSKSALLHSQPKSMVGTLIYNAPEVLARREYDEKIADVWSCGVILYVMLVGKYPFDVDDRNDPKYSTKVMKKITNVQYSIPEYVHISAECRQLLSSIFVANPAKRITISAIKQHPWFLKHLPREVSEADKKCYKETPKDQLLCQQSVEEILRIVQEAKSTPRPSSSEFMGNFIGNVEEE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00620 327 PANTHER SERINE/THREONINE KINASE 4 293 - -
Trre10g00620 327 SMART serkin_6 7 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00620 327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Trre10g00620 327 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
Trre10g00620 327 ProSiteProfiles Protein kinase domain profile. 7 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00620 327 Pfam Protein kinase domain 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00620 327 Gene3D Transferase(Phosphotransferase) domain 1 83 273 - -
Trre10g00620 327 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Trre10g00620 327 FunFam Serine/threonine-protein kinase SRK2A 83 273 - -
Trre10g00620 327 SUPERFAMILY Protein kinase-like (PK-like) 5 295 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00620 Trre-Chr10 4254667 4260642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00620 5 267 CBL-interacting serine-threonine protein kinases AT4G24400 41.328 1.21e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre10g00620 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00620 K14498 - gmx:547790 436.032