Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00619 ATGGAGGACCAACGTTACAAGTACATTCCAAGAGGAGTTAAGGTTAATGAGAATGTTGAAAGAGAGATAATTAATCATAGATCTTTAAGCCATCCACACATCACCAAGTTCAAAGAATTATTTGTGACACCATCTCATTTGGCAATTGTCCTTGAGTATGCTGCTGGTGGTGAACTTTTTCATTGGATAACCCATAGGGGTCGTCTTAGTGAACATGAGGCAAGATATTTCTTCCAGCAACTAATATCTGGAGTCCAATACATCCATTCCATGCAAATTTGTCATAGGGATTTGAAATTGGAGAACACTCTATTGGATTTGGATAAAAATTCACCTCCTCGACTCAAAATTTGTGACTTTGGTTTCTCCAAGTCTATTTTACTGCACTCTCGACCCAAATCAACAGTTGGAACTCCCGCATACATTGCACCAGAGATTTTTTCGAGAAAGGAGTATGATGGAAAGACTGCAGATGTTTGGTCATGTGGTGTTATTCTTTATGTCATGATGGTTGGATCATACCCATTTGAAGATCCAGAAGATCCTAAAAATTTCAGAAAAATTATTAAGAAAATAATGGATGTTCAATACTCCATACCCAACTATGTATATATGTCTGCAAACTGTAGGCAATTTCTCTCTAGAATTTTTGTTGCCAATCCTGCTAAGAGAATCACAATATCAGAGATTCAACAGCACCCTTGGTTTATGCCATACATGCCTATAAAAATTGTTGATGCTGGTAGAACATGTTACCAAGAAACCAACAATGATCAATTACCTAGGCAACAAAGTGTAGAAGAAATCATGCAGATTATACATGAAGCAAGAACAATACCTAGGCCAAGTTCATGGAATGTTGCTGATGTTGATGGGAATGTTGAAGAGAAAGTTGATGATGTTAATGGTGACCTTGTGAAAATGAAACTTGTGTGA 936 0.3707 MEDQRYKYIPRGVKVNENVEREIINHRSLSHPHITKFKELFVTPSHLAIVLEYAAGGELFHWITHRGRLSEHEARYFFQQLISGVQYIHSMQICHRDLKLENTLLDLDKNSPPRLKICDFGFSKSILLHSRPKSTVGTPAYIAPEIFSRKEYDGKTADVWSCGVILYVMMVGSYPFEDPEDPKNFRKIIKKIMDVQYSIPNYVYMSANCRQFLSRIFVANPAKRITISEIQQHPWFMPYMPIKIVDAGRTCYQETNNDQLPRQQSVEEIMQIIHEARTIPRPSSWNVADVDGNVEEKVDDVNGDLVKMKLV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00619 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 93 105 IPR008271 GO:0004672|GO:0006468
Trre10g00619 311 PANTHER SERINE/THREONINE KINASE 17 265 - -
Trre10g00619 311 Gene3D Transferase(Phosphotransferase) domain 1 6 287 - -
Trre10g00619 311 SUPERFAMILY Protein kinase-like (PK-like) 13 253 IPR011009 -
Trre10g00619 311 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00619 311 FunFam Serine/threonine-protein kinase SRK2A 54 244 - -
Trre10g00619 311 SMART serkin_6 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00619 311 Pfam Protein kinase domain 16 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00619 Trre-Chr10 4234319 4237563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00619 14 260 CBL-interacting serine-threonine protein kinases AT4G24400 42.520 4.21e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre10g00619 Pkinase 2.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00619 K14498 - vvi:100243594 407.912