Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00618 ATGGCTCGTAAAAACATCGAACCAAATGCTACTTTGATAAACCGTTTGATTCTTCTTTTGGTGTGTTTGGGTTCTTGTGGTTTGGTTTATGTTTTTCTCTCTGTGGTAACTAGAAGTGGTTCTGTTTCTGAGCTTAGAAATGGGTCAACGTCTTCGTTAGATTTGGTTGGTGAGAAAAATGTTGGTGGGTGTTGTAGAGGGATTGAAAATTTGGAATTTTGGGGTTCAGCTGTTAAATGGGGTTCTGATTTCAAATTCAATACTTCTGAAGAATGTTGTAATGCTTGTAAATCTATGTGTACTGGAAAAGATGGACCTTGTCTTTGTGATACTTGGGTCTTTTGTGGTAATCGTCAAGCTTGTGGCTCAAAATTCGGCGAGTGTTGGTTGAAGAAACAAAAGGATAGCTTAGCTCCTGAGCGGCAAGAAGAAGCACCTCATGGGGAGACAATTAGTTGGACTTCCGGTCTCATCTTTGGAAAAGGCGAGGGTATTATTGGATTGGAAACTGAACATGGAACTCTTCATATAAAACTTTTCCCTGACTGTGCTCCACACTCAGTTGCCTATATTCTAGAGTTGTTGCCTATGCGCCATTGTGCAGGCTGCCAATTTTACCGTGCAGAGAGTCGAGGTCAATCATGGGATTCAGAAGGAAACCACATAAAAAATGCTGGTTTTGGTCCCCCATTTGCATTAATTCAAGGGACATTAGAAGCACAAGGCACACCATTCAATAAACTTCCATTGGAAGACTGTCCAATCTTAAGAAGAGGCTCAGTTGCTTTGATTGGTTCTGGTCCAGAATTCTTTATTAGCCTAGCTGATCACTCAGAGTGGAAACAAGAATACACTGTCTTCGGTTCTGTTCTTCCGGAAGACATGAATGTTGCCGAGAAAATTGCTGCACTCCCCACACTACCTGATGTTTGGAACAACGTTAATGTGACCGTTTTGGAAAAACCTGTTCCTTTCTTGGTCAGAAGAATCAATAAAAGCAGTCAAGATTGA 1011 0.4125 MARKNIEPNATLINRLILLLVCLGSCGLVYVFLSVVTRSGSVSELRNGSTSSLDLVGEKNVGGCCRGIENLEFWGSAVKWGSDFKFNTSEECCNACKSMCTGKDGPCLCDTWVFCGNRQACGSKFGECWLKKQKDSLAPERQEEAPHGETISWTSGLIFGKGEGIIGLETEHGTLHIKLFPDCAPHSVAYILELLPMRHCAGCQFYRAESRGQSWDSEGNHIKNAGFGPPFALIQGTLEAQGTPFNKLPLEDCPILRRGSVALIGSGPEFFISLADHSEWKQEYTVFGSVLPEDMNVAEKIAALPTLPDVWNNVNVTVLEKPVPFLVRRINKSSQD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00618 336 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 168 310 IPR002130 GO:0000413|GO:0003755
Trre10g00618 336 SUPERFAMILY Cyclophilin-like 161 318 IPR029000 -
Trre10g00618 336 PANTHER EXPRESSED PROTEIN 1 334 - -
Trre10g00618 336 Gene3D - 159 322 IPR029000 -
Trre10g00618 336 FunFam Predicted protein 161 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00618 Trre-Chr10 4230062 4233268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00618 161 291 U-box Gene Family AT5G67530 26.812 9.79e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00618 - - gmx:100820360 553.903