Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00617 ATGAATTTTCAACAACTTCCTCATCTCTTTCAACAAGAGATTCCTATTAAGAAGGATGATGCAAGATGTGCACAAATGACAATCTTTTATGATGGAAAAGTGATTGTGCTTGATGATATTACACCTGAAAAAGCCAAGGATATTATGGTCTTTTCAACTAACAACTATGCTGCTTACCCTTCATTTCTTGCTGGAAATTCTGTCAATAAGACTGTTCAAGTACCATCTACAGTACCTGTTATTTATGATTTACCAATGACTAGGAAAGCTTCACTTCATAGATTCTTGGAGAAAAGGAGAAATAGAATTGCTGCAAGGGCACCCTATCAAATAACTTATCCAGCAGCAACCATTAATAAGACAATTGATGAATCCATGGCATGGCTCTCTTTGACACCACAATCGCCGCAACACAAATCTGAGTGTAGCTCCACCTCAGTGTTATTTTAA 450 0.3689 MNFQQLPHLFQQEIPIKKDDARCAQMTIFYDGKVIVLDDITPEKAKDIMVFSTNNYAAYPSFLAGNSVNKTVQVPSTVPVIYDLPMTRKASLHRFLEKRRNRIAARAPYQITYPAATINKTIDESMAWLSLTPQSPQHKSECSSTSVLF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00617 149 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 132 IPR040390 -
Trre10g00617 149 SMART tify_2 19 54 IPR010399 -
Trre10g00617 149 Pfam Jas motif 85 110 IPR018467 -
Trre10g00617 149 ProSiteProfiles Tify domain profile. 19 54 IPR010399 -
Trre10g00617 149 Pfam tify domain 24 49 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00617 Trre-Chr10 4228177 4229051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00617 18 131 Tify Gene Family AT1G19180 36.641 6.03e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre10g00617 tify 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00617 K13464 - mtr:112421766 183.341