Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00616 ATGAATCATCATCATCATCATCATCAGCATCACTATCTTACACCTCCTAGTATGAATTTTCAACAACTTCCTCATCTCTTTCAACAAGAGATTCCTATTAAGAAGGATGATGCAAGATGTGCACAAATGACAATCTTTTATGATGGAAAAGTGATTGTGCTTGATGATATTACACCTGAAAAAGCCAAGGATATTATGGTCTTTTCAACTAACAACTATGCTGCTTACCCTTCATTTCTTGCTGGAAATTCTGTCAATAAGACTGTTCAAGTACCATCTACAGTACCTGTTATTTATGATTTACCAATGACTAGGAAAGCTTCACTTCATAGATTCTTGGAGAAAAGGAGAAATAGAATTGCTGCAAGGGCACCCTATCAAATAACTTATCCAGCAGCAACCATTAATAAGACAATTGATGAATCCATGGCATGGCTCTCTTTGACACCACAATCGCCGCAACACAAATCTGAGTGTAGCTCCACCTCAGTGTTATTTTAA 501 0.3693 MNHHHHHHQHHYLTPPSMNFQQLPHLFQQEIPIKKDDARCAQMTIFYDGKVIVLDDITPEKAKDIMVFSTNNYAAYPSFLAGNSVNKTVQVPSTVPVIYDLPMTRKASLHRFLEKRRNRIAARAPYQITYPAATINKTIDESMAWLSLTPQSPQHKSECSSTSVLF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00616 166 ProSiteProfiles Tify domain profile. 36 71 IPR010399 -
Trre10g00616 166 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 32 149 IPR040390 -
Trre10g00616 166 Pfam tify domain 41 66 IPR010399 -
Trre10g00616 166 SMART tify_2 36 71 IPR010399 -
Trre10g00616 166 Pfam Jas motif 102 127 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00616 Trre-Chr10 4228126 4229051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00616 35 148 Tify Gene Family AT1G19180 36.641 9.92e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre10g00616 tify 6.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00616 K13464 - mtr:112421766 186.808