Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00613 ATGTGTAACTCTCAAGACTCTTTTATTTGCTCTAGAGCAACTTACTATGGTAGCCCAGATTGTTATGGAAATCCAAAGGGAGCTTGTGGCTACGGTGATTACGGGCAGACGATAAACGACGGTAATGTTGCCGGCGTGTCCTGGCTGTGGAAGAATGGATCTGGTTGTGGTGCATGCTATCAAGTGAGGTGCAAAATACCACAATTGTGTGATGAGAATGGAGCTTATGTGGTGGTGACTGATCATGGTGTGGGAGATAGGACAGACTTCGTCATGAGTCCACGTGGCTATTCAAGATTGGGGATAAATGCTGATGCATCTGCAGAACTTTTCAAATATGGTGTGGTTGATATAGAATATAAAAGAGTCCCTTGCAAATACAATGGTTATAACATCTTGCTTAAGGTCCATGAACGCAGCAAAAACCCTCACTACTTGGCCATTATCATTCTGTATGTTGGTGGAACAAATGATATAACTGATGTTCAATTGTGGCAGGAAGATTGTCAAGAGTGGAGGCCAATGCGTAGGGTGTTTGGGACAGTGTTTGATGCAGAGAACCCTCCAAGAGGTCCTACCAAGTTGAGGTTACAAGTGAGTGGTAGTGCTGGTCTTTATTGGGTGGAATCCAAGAGTGTTATCTCTAGTGATTGGGAAGCTGGGGCTGTTTATGACTCACAAATTCAGTTTGATTAA 696 0.4353 MCNSQDSFICSRATYYGSPDCYGNPKGACGYGDYGQTINDGNVAGVSWLWKNGSGCGACYQVRCKIPQLCDENGAYVVVTDHGVGDRTDFVMSPRGYSRLGINADASAELFKYGVVDIEYKRVPCKYNGYNILLKVHERSKNPHYLAIIILYVGGTNDITDVQLWQEDCQEWRPMRRVFGTVFDAENPPRGPTKLRLQVSGSAGLYWVESKSVISSDWEAGAVYDSQIQFD 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00613 231 Pfam Lytic transglycolase 43 120 IPR009009 -
Trre10g00613 231 Pfam Expansin C-terminal domain 134 214 IPR007117 -
Trre10g00613 231 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 144 226 IPR007117 -
Trre10g00613 231 Gene3D - 1 125 IPR036908 -
Trre10g00613 231 Gene3D - 126 227 IPR036749 -
Trre10g00613 231 PANTHER EXPANSIN-B3 11 230 - -
Trre10g00613 231 CDD DPBB_EXLB_N 11 125 - -
Trre10g00613 231 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 26 130 IPR007112 -
Trre10g00613 231 SUPERFAMILY Barwin-like endoglucanases 5 129 IPR036908 -
Trre10g00613 231 SUPERFAMILY PHL pollen allergen 131 226 IPR036749 -
Trre10g00613 231 PRINTS Expansin/Lol pI family signature 7 22 IPR007118 GO:0005576
Trre10g00613 231 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Trre10g00613 231 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Trre10g00613 231 PRINTS Expansin/Lol pI family signature 113 129 IPR007118 GO:0005576
Trre10g00613 231 PRINTS Expansin/Lol pI family signature 172 186 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00613 Trre-Chr10 4202332 4204028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00613 1 230 Expansin Gene Family AT4G17030 60.173 1.09e-105 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00613 - - gmx:100802855 419.083