Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00611 ATGAGTTCAGAGCCATCAAGAGGAACGGTAGTATCAATGTCACTCTGTAATGGACATTCTGAACAAGAATTAGGGATTCCGTTGATGGAAAATGGAGGCTCTAGTATTCTTGCTCGGCCAAAGATTAAACGCCGTGCAGTTTCTGCAGTTCGTGATTATCCAGAAGAATGTGGACTATTTGGTTCTGCTGATGGTACATCTGTTGAGGATAAGAGTGAAGAATGTTTAGGTGGTGACGCTGTTAGTCCCAACCATGAAGATGATTTTCAACATTCTGAGGTTGGTAAGAATTTGTTTGATACAGAGACTCTTGAACAAACACGTGACTGTAGTTTGAAGAAGGAAGATCTTGTTGTTTTATCTGATCAAGTGGAAGGGGATACTTTTGCTAACGATGAGGCTGCAAAAGTAGCATTGGTGGGCATGGAAACTTCAGATATGGAATTTGCAACTGAAGTGAAAAAGGAAGATCATATGGTCTCATCTCATCAAGAGGATGGGGATACTTTTGCTAATAATGAACCTGCAAAAGTTGCATCGGTGGACATGGAAAATGGAGATATGGAGTTTGCGACTGAAGTGAAAAAGGAAGATCAGGTCTCATCTCATCAAGTCGACCAGCCTACATTGGATAATGTCGAACAAGAAAATGTGGCATTGGCGGACATGGAAACTTTGGATGCAGAATTTGCAACTGAAAGCTGTAGTCAGAAGAAGGAAAATCCTACGGATGTGTCTACTTTTGCTACTGATGAACCTGCAAAACTGGCAGTGGTGGGCACGGAAACTTTGGATACTGAATTTGCAACAGAAGACTCCGTAAAACAAGATTTCTGTAATATATCGTCTCCATTTGGTGAGGTAGCTATGTATGATGACTCAAAGTCCTTGACATCCAATATCGATATAGGTGGTTCTGGTGCTCGTATGGAGGAGACTGTAACTAAAAAGTATCCTCCTCGTAAAAAAGTTGCAGCGATCAGAGATTTTCCACGTTTATGTGGACGCAATGCTCCCCTTCTTACTAAGGACGAGTGTTTAAGGGAGCTTTCTTCTTTGAATAAAAGGACAGTGGGTCAAACTGACGTGAAAGAAGCAGATAATAACAAGAGAAAGCTTGCTAACATTGTTCAAGCTGACTCTGAAGGGAATGCTACACAGAGAGTTAAGAAGATGGATGTAGTCGAACCATCTTCTGAGATGGGATTGGCACTGAATAACACAAGAGAAATGAACACTCAACTTTCTGAAAAATATAATCTCCATCAGGTTAACATAAATCCAAAGGCAGTGGTTAAAGAGGAAAACACGAACACTGTTCAGGTCGAGGGAACATCTGGCAGGAAAATAGTGCTAGGTTTGATGGCTAAATCAGAATGTCCTTGGAGATCTGATATCATTTCCCCCAAATTTAAACCAGCAACAATAGGTGGCACAGATGAAAGGAAGGGAAAGAAAGTTGATTTTTATGCTCAGCTAGACAGGTCTAAAACTGCTGTCAAGACGAAACATGTACCGAATCATTCTGAGCATGTGCAGTTGAAAAAGAAAAAAGCAAATTCTAATTCTGATGACATGGGCGAATTAGTAAGACGGGAGAATAATTCTCTAGACCCTAATAAACATAGCAAAAACTTTAAAAATGTCCCAAAATCACATGGTGTAAATGTTCCTCCTCTTGGTCGTAGTAATTTCAGTGGTCGTGAGAATGACTCAATGGCCCGGAATAAAGTGAGGAATGCATTGCGCCTGTTCCAAGCTGTTTCTAGAAAACTTTTGCAGGAAGCGGAAGCAAAAGCAAAGTCAAACGAGAAAGAAAGAAGGAGGTTTGATTTACAAGCTGCAAAAATACTTAAGGAGAAAGGGAACTATGTTAATGAAGGGGAGAAGATCATGGGAGCTGTCCCCGGGGTTGAAGTCGGTGATGAATTTCAATACAGAATAGAGCTTAATATAATCGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATATGAAGCACAAAAATAAAATGCTTGCAACTAGTATTGTTGCGTCAGGGGGCTATTCTGATGAATTAGATAATACAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCTTTGAAGAACAGCAGTGAGGAAAAGAATCCTGTTAGGGTGATACGGGGTTCTGAGTCAATGGATGGAAAAAGCAAGATATATGTTTATGATGGACTTTATCTAGTTGAGTCATGTTGGCAGGAAATGGGGACACATGGGAAGCTGGTTTATAAGTTTCGTTTGCAAAGAATCCCAGGTCAACCAGAGCTTGCCTTGAAGGAAGTGAAGAAATCTAAAAAGTTCAAAATAAGGGAAGGTCAATGCGTCAAAGATATTTCCTACGGTAAAGAGAGAATTCCCATATGTGCTGTGAACACTATAGATGACGAGAAGCCCCCTACATTTAAATACATAACTAAGATGATATATCCTGATTGTTGCAATCTTGTCCCTCCAGAAGGCTGTGGTTGTACTAATGGATGCTCTGACCATGCAAAATGTTCCTGTGTACTAAAAAATGGGGGAGAGATTCCATTCAATCATAATGGGGCTATTGTAGAAGCGAAGTCTCTGGTCTATGAGTGTGGGCCTAAATGCAAGTGCCCTCCAACATGCCATAACAGAGTCAGCCAACTTGGCATAAATATTCAACTTGAAATTTTTAAAACCAATTCAATGGGATGGGGTGTAAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATATGTGAATATATAGGAGAGGTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACAAAACCAACAATACTCTTTGGGATGGACTTTCGACACTTTTACCAGATTCACACTCAAGTTCCTGTGAAGTAGTGAATGATGTTGGCTTCACTATCGATGCTGCTCAGTTTGGTAATGTGGGGAGATTCATCAACCACAGTTGCTCCCCTAATCTCTATGCTCAGAATGTCCTTTATGATCATAATGACATCAGGATTCCTCACGTCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGAGTTACGATTACAATTATATGATAGATCAAGTCCGTGATTCTGATGGCAATATAAAAAAGAAGTACTGCTATTGTGGTTCTGTGGAATGTACTGGTTTCCTCCTCCGGAGGTAA 3255 0.4043 MSSEPSRGTVVSMSLCNGHSEQELGIPLMENGGSSILARPKIKRRAVSAVRDYPEECGLFGSADGTSVEDKSEECLGGDAVSPNHEDDFQHSEVGKNLFDTETLEQTRDCSLKKEDLVVLSDQVEGDTFANDEAAKVALVGMETSDMEFATEVKKEDHMVSSHQEDGDTFANNEPAKVASVDMENGDMEFATEVKKEDQVSSHQVDQPTLDNVEQENVALADMETLDAEFATESCSQKKENPTDVSTFATDEPAKLAVVGTETLDTEFATEDSVKQDFCNISSPFGEVAMYDDSKSLTSNIDIGGSGARMEETVTKKYPPRKKVAAIRDFPRLCGRNAPLLTKDECLRELSSLNKRTVGQTDVKEADNNKRKLANIVQADSEGNATQRVKKMDVVEPSSEMGLALNNTREMNTQLSEKYNLHQVNINPKAVVKEENTNTVQVEGTSGRKIVLGLMAKSECPWRSDIISPKFKPATIGGTDERKGKKVDFYAQLDRSKTAVKTKHVPNHSEHVQLKKKKANSNSDDMGELVRRENNSLDPNKHSKNFKNVPKSHGVNVPPLGRSNFSGRENDSMARNKVRNALRLFQAVSRKLLQEAEAKAKSNEKERRRFDLQAAKILKEKGNYVNEGEKIMGAVPGVEVGDEFQYRIELNIIGLHRQIQGGIDYMKHKNKMLATSIVASGGYSDELDNTDVLIYTGQGGNVMSSDKDPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKSKIYVYDGLYLVESCWQEMGTHGKLVYKFRLQRIPGQPELALKEVKKSKKFKIREGQCVKDISYGKERIPICAVNTIDDEKPPTFKYITKMIYPDCCNLVPPEGCGCTNGCSDHAKCSCVLKNGGEIPFNHNGAIVEAKSLVYECGPKCKCPPTCHNRVSQLGINIQLEIFKTNSMGWGVRSLNSIPSGSFICEYIGEVLEDKEAEQRTGNDEYLFDIGNNKTNNTLWDGLSTLLPDSHSSSCEVVNDVGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHNDIRIPHVMLFAAENIPPLQELSYDYNYMIDQVRDSDGNIKKKYCYCGSVECTGFLLRR 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00611 1084 MobiDBLite consensus disorder prediction 498 540 - -
Trre10g00611 1084 CDD SET_AtSUVH-like 828 1053 - -
Trre10g00611 1084 SUPERFAMILY PUA domain-like 617 789 IPR015947 -
Trre10g00611 1084 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 615 793 - -
Trre10g00611 1084 ProSiteProfiles YDG domain profile. 633 776 IPR003105 -
Trre10g00611 1084 Pfam Pre-SET motif 805 901 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre10g00611 1084 SUPERFAMILY SET domain 792 1053 IPR046341 -
Trre10g00611 1084 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 497 1084 IPR025794 GO:0016571
Trre10g00611 1084 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 450 1075 - -
Trre10g00611 1084 Coils Coil 593 613 - -
Trre10g00611 1084 MobiDBLite consensus disorder prediction 498 570 - -
Trre10g00611 1084 Pfam SAD/SRA domain 632 780 IPR003105 -
Trre10g00611 1084 ProSiteProfiles SET domain profile. 909 1052 IPR001214 GO:0005515
Trre10g00611 1084 SMART preset_2 802 893 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre10g00611 1084 SMART set_7 909 1058 IPR001214 GO:0005515
Trre10g00611 1084 Pfam SET domain 920 1052 IPR001214 GO:0005515
Trre10g00611 1084 Gene3D - 615 796 IPR036987 -
Trre10g00611 1084 ProSiteProfiles Post-SET domain profile. 1066 1082 IPR003616 -
Trre10g00611 1084 SMART G9a_1 628 780 IPR003105 -
Trre10g00611 1084 ProSiteProfiles Pre-SET domain profile. 846 906 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre10g00611 1084 Gene3D SET domain 797 1082 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00611 Trre-Chr10 4197911 4201590 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00611 564 1079 Su(var)3-9 homologs AT5G04940 40.150 5.02e-116 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre10g00611 SAD_SRA 1e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00611 K11420 - gmx:100803378 1134.4