Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00609 ATGTCACTCTTTAATGGACATTCTGAACAAGAATTAGGGATTCCGTTGATGGAAAATGTAGGCTCTAGTATTCTCTGTGCAGTTTCTGCATTTCGTGATTTTCCAGAAAAATGTGGACCATTTGATTCTGCTGATGGTACATCTGTTGAGGATAAGAGTGAAGAATGTTTAGGTGGTGAAGCTGTTAGTCCCAACCTTGAAGACGATTCTCAATATTCTGAGGTTGATAAGAATTTGTTTGATATAGAGACTCTTGAACAAACAAGTGACTGTAGTTTGAAGAAGGAAGATCTTGGTGTCTTATCTGATCAAGTGGATGGGGATACTTTGGCTAATAATGAACCTGCAAAAGTTGCATTGGTGGACATGGAAACTTCGGATATCGAATTTGCAACTGAAGTGAAAAAGGAAGATCATATGGTCTCACCTCATCAAGTCGACCAGCCTACATTGGATAATGCTGAACAAGCAAATGTGGCATTGGCGGACATGGAAACTCTGGATGCAGAATTTGCAACTGGAGATATGGAGTTTGCAACTGAAGTGAAAAAGGAAGATCGGGTCTCATCTCATCAAGTTGACCAGCCTACATTGGATAATGTCGAACAAGAAAATGTGGCATTGGCGGAAGTGGAAACTTTGGATGTAGAATTTTCAAAAGAAATCAGGGCAAGTAATGTGATTAGGGATGGTATGGAGGAGTCTGTACCTAAAAGGTATCCTTCTCGTGCAAGAGTTGCAGCGATCAGAGATTTTCCACGTTTATGTGGACGCAATGCTCCCCTTCTTACTAATGACGAGTGTGTAAAGGAGCTCTCTTCTTTGAATAAAAGGAGAGTGGGTCAAACTGACGTAAAAGAAGTGGATAGTAACAAGAGAAAACTGGCTAATATCGTTCAAGCTGACTCTGAAGGGACTGCTACACAGAGAGTTAAGAAGATGGATGTAGGTGAACCATCTTCTGAGATGAGATTGACACTGGACAACACAAGAGAAAAAAAGAACACTCAACTTTCTGAAAAATATAATCACCATCAGGTTAACATAAATCCAAAGGCAATGGTTAAAAAGGAAAACACTAACACTGTACAGGCCGAGGAAACATCAGGCAGGAAAATAATGCTAGGTTTGATGTCTAAATCAGAATGTCATGGGAGATCTGATATCAGTTCCCTCAAATTTAAACCAGCGTCAATAGGTGGCACAGATGAAAGCAACGGAAATAAAGTTGATTTTTATGCCCGGGTAGACAGGTCTAAAACTGCTGTCAAGACGAAACATGTACCGAATCATTCTGAGCACGTGCAGTTGAAAAAGAAATCTAATTCTGATGACATGGGTGAATTAGTAAGACGGGAGAATAATTCTCTAGACCCTAATAAGAAACACAAAAACTTTCAAAGCGTCCCAAAATCACATGGTGTAAATGTTCCTCCTCTTAGTCGTGAGAATGACTCAATCGCCCGGAATAAAGTGAAGAATGCATTGCGCCTGTTCCAAGATGTTTCTAGAAAGCTTTCGCAGGAAGCCGAAGCAAAGTCAAACGAGAAAGAAAGACGGAGGTTTGATTTACAAGCTGCGAAAATACTTAAGGAGAAAGGGAACTATGTTAATGAAGGGGATAAGATCTTGGGACCTGTCCCCGGGGTTGAAGTTGGTGATAAATTTCAATACAGAATAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTGAAGCACAGAAATAAAATCCTTGCAACTAGTATTGTTGCGTCAGGGGGCTATTATGATGAATTAGATAATACAGATGTTTTGATATATACAGGGCAGGGGGGAAATGTGATGAGCAATGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCTTTGAAGAACAGCAGCGAGGAAAAGAATCCTGTTAGGGTGATACGGGGTTCGGACTCAATGGATGGAAAATACAAGATATATGTTTATGATGGGCTTTATCTAGTTGAGTCATGTTGGCAGGAAATGGGGTCACATGGCAAGCTGGTTTATAAGTTTCGCATGCGGAAAATCCCAGGTCAACCAAAGCTTGCCTTGAAGGATGTGAAGCAATCTAAAAGAGGTTAA 2121 0.405 MSLFNGHSEQELGIPLMENVGSSILCAVSAFRDFPEKCGPFDSADGTSVEDKSEECLGGEAVSPNLEDDSQYSEVDKNLFDIETLEQTSDCSLKKEDLGVLSDQVDGDTLANNEPAKVALVDMETSDIEFATEVKKEDHMVSPHQVDQPTLDNAEQANVALADMETLDAEFATGDMEFATEVKKEDRVSSHQVDQPTLDNVEQENVALAEVETLDVEFSKEIRASNVIRDGMEESVPKRYPSRARVAAIRDFPRLCGRNAPLLTNDECVKELSSLNKRRVGQTDVKEVDSNKRKLANIVQADSEGTATQRVKKMDVGEPSSEMRLTLDNTREKKNTQLSEKYNHHQVNINPKAMVKKENTNTVQAEETSGRKIMLGLMSKSECHGRSDISSLKFKPASIGGTDESNGNKVDFYARVDRSKTAVKTKHVPNHSEHVQLKKKSNSDDMGELVRRENNSLDPNKKHKNFQSVPKSHGVNVPPLSRENDSIARNKVKNALRLFQDVSRKLSQEAEAKSNEKERRRFDLQAAKILKEKGNYVNEGDKILGPVPGVEVGDKFQYRIELNIIGLHRQIQGGIDYVKHRNKILATSIVASGGYYDELDNTDVLIYTGQGGNVMSNDKDPEDQKLERGNLALKNSSEEKNPVRVIRGSDSMDGKYKIYVYDGLYLVESCWQEMGSHGKLVYKFRMRKIPGQPKLALKDVKQSKRG 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00609 706 ProSiteProfiles YDG domain profile. 545 688 IPR003105 -
Trre10g00609 706 Pfam SAD/SRA domain 544 692 IPR003105 -
Trre10g00609 706 SMART G9a_1 540 692 IPR003105 -
Trre10g00609 706 SUPERFAMILY PUA domain-like 529 700 IPR015947 -
Trre10g00609 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 356 704 - -
Trre10g00609 706 MobiDBLite consensus disorder prediction 455 482 - -
Trre10g00609 706 Gene3D - 527 706 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00609 Trre-Chr10 4191339 4194078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00609 465 693 Su(var)3-9 homologs AT5G04940 41.880 2.32e-39 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00609 K11420 - tpra:123908193 754.592