Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00608 ATGGGTAAACATGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCAGAGAAGCCAATACTATGCAATGCATGCGGTTCACGGTGGAGGACAAAGGGAACACTTGCGAATTATACGCCTTTACATGCTCGGGCTGAAACTGATGATTTTGATGATCAAAGGGCTTCCAGGGTAAAGAGCATATCGTTAAATAAGAACAAAGAAGTGAAATCGCTCAAACGGAAGCAGAACCGTGATAATGTAGCATCTGGTGGTGGGCTTGCATATGATTACAACCAAGGATTCCAAAAGGCTTTTGATGAAGATATAAGCAACCGATCAAGTTCAGGATCAGCCTTGTCTAACTCAGAAAGCTGTGCACAATTTGGCGGCACAGATGCTAGTGATCTGACAGGACCTGCTCAGTCAGTGGTCTGGGATACCACGGTGCCTTCGAAGAAGAGGACATGTGTTGGTCGTTCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACGATTCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTACGAAAGTGAAGCACCAATGGTTTCTGTTGAGATAGGACACGGAAGTGTTCTCATTAGGCATCCTAGCTATGTAGCTCGTGATGAAGAGTCTGAAGCTAGCTCTCTTTCATTTGATAATAGACAATATCTGATGAGTGAGGCATATTCTTATTCTGGTGCCGTTCTTACGCATAATGGTTCCAGTCACACGAACTTCTCATCTCAGGGAGCTGAAAAGGCCAGGAACTCGGCTGTTCAGGGAATAAAGCAGGAGCAAGATGTGGTAAACTATGAAGAGTTTTCGAGGAACTTGTCAAATGAAGAGCAGCAGCAATTGTTGAAGTTTCTTCCTGCGGTTGATACTGCTAAACTTCCTGATAGCCTTAATGTCATGTTCGATAGCTCTCAATTCAAGGAGAACATAACTTATTTTCAGCAGCTTCTTGTGGAAGGTGTCTTTGATATCTCTTTGTCGGGGGCAAAACCTGAAGATTGTAAAACTTTGAAAAGATATGCACTTTCTAATTTGTCAAAGTCGAAATGGGTGGAACACTATCATTTTCTCAAGCGATGTAAAAATAGAGCTGAAAAATCTGATACTCCGGGATCTACAGCATCGGCCAATTTTGCAAACACGAAGAGAAAGCGTGACAGCAGAATTCAGAACTTTTCAGAGGTGAAGACAATAATGAGGAGTCCCAAAAGAATTATCACAAAGACTAGTTATGAAGGAAAACTTGTAGATGATGGCACTTGCTATAATCCAAAAAGCCTATTCCCTTTGCCTCCTGATGCTAGCTCACACTTGCTTGATTCTTTTAACTTCGTCGAGGAAAGTTCTGATCAGGATTTGCTGTTAGATGTGCCGTCTAATAATTCTTTTCCACAGGCAGAACTCTTGCACCCAAATTCAAGCTATGGTGCTCAAGCCAGGACTAGTAGTAGCTCAGCATACTCACATCTTGTGAACCATTAA 1536 0.4238 MGKHGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQRASRVKSISLNKNKEVKSLKRKQNRDNVASGGGLAYDYNQGFQKAFDEDISNRSSSGSALSNSESCAQFGGTDASDLTGPAQSVVWDTTVPSKKRTCVGRSKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLYESEAPMVSVEIGHGSVLIRHPSYVARDEESEASSLSFDNRQYLMSEAYSYSGAVLTHNGSSHTNFSSQGAEKARNSAVQGIKQEQDVVNYEEFSRNLSNEEQQQLLKFLPAVDTAKLPDSLNVMFDSSQFKENITYFQQLLVEGVFDISLSGAKPEDCKTLKRYALSNLSKSKWVEHYHFLKRCKNRAEKSDTPGSTASANFANTKRKRDSRIQNFSEVKTIMRSPKRIITKTSYEGKLVDDGTCYNPKSLFPLPPDASSHLLDSFNFVEESSDQDLLLDVPSNNSFPQAELLHPNSSYGAQARTSSSSAYSHLVNH 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00608 511 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Trre10g00608 511 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 268 381 IPR044867 -
Trre10g00608 511 Gene3D - 2 86 IPR013088 GO:0006355|GO:0008270
Trre10g00608 511 MobiDBLite consensus disorder prediction 491 511 - -
Trre10g00608 511 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Trre10g00608 511 PANTHER OSJNBB0038F03.10 PROTEIN 1 509 IPR044589 -
Trre10g00608 511 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Trre10g00608 511 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Trre10g00608 511 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Trre10g00608 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00608 Trre-Chr10 4182889 4186990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00608 1 488 C2C2-Gata Transcription Factor Family AT4G17570 50.380 3.29e-144 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre10g00608 GATA 4.7e-14 CL0167