Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00607 ATGGGTAAACATGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCAGAGAAGCCAATACTATGCAATGCATGCGGTTCACGGTGGAGGACAAAGGGAACACTTGCGAATTATACGCCTTTACATGCTCGGGCTGAAACTGATGATTTTGATGATCAAAGGGCTTCCAGGGTAAAGAGCATATCGTTAAATAAGAACAAAGAAGTGAAATCGCTCAAACGGAAGCAGAACCGTGATAATGTAGCATCTGGTGGTGGGCTTGCATATGATTACAACCAAGGATTCCAAAAGGCTTTTGATGAAGATATAAGCAACCGATCAAGTTCAGGATCAGCCTTGTCTAACTCAGAAAGCTGTGCACAATTTGGCGGCACAGATGCTAGTGATCTGACAGGACCTGCTCAGTCAGTGGTCTGGGATACCACGGTGCCTTCGAAGAAGAGGACATGTGTTGGTCGTTCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACGATTCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTACGAAAGTGAAGCACCAATGGTTTCTGTTGAGATAGGACACGGAAGTGTTCTCATTAGGCATCCTAGCTATGTAGCTCGTGATGAAGAGTCTGAAGCTAGCTCTCTTTCATTTGATAATAGACAATATCTGATGAGTGAGGCATATTCTTATTCTGGTGCCGTTCTTACGCATAATGGTTCCAGTCACACGAACTTCTCATCTCAGGGAGCTGAAAAGGCCAGGAACTCGGCTGTTCAGGGAATAAAGCAGGAGCAAGTTAAAAGTGACAAGTCTCAGATTGAACGAGTACAAATCCTTGGAAGTCATGATTCACCACTGAGCTCAATAGATTTAAATGATGTGGTAAACTATGAAGAGTTTTCGAGGAACTTGTCAAATGAAGAGCAGCAGCAATTGTTGAAGTTTCTTCCTGCGGTTGATACTGCTAAACTTCCTGATAGCCTTAATGTCATGTTCGATAGCTCTCAATTCAAGGAGAACATAACTTATTTTCAGCAGCTTCTTGTGGAAGGTGTCTTTGATATCTCTTTGTCGGGGGCAAAACCTGAAGATTGTAAAACTTTGAAAAGATATGCACTTTCTAATTTGTCAAAGTCGAAATGGGTGGAACACTATCATTTTCTCAAGCGATGTAAAAATAGAGCTGAAAAATCTGATACTCCGGGATCTACAGCATCGGCCAATTTTGCAAACACGAAGAGAAAGCGTGACAGCAGAATTCAGAACTTTTCAGAGGTGAAGACAATAATGAGGAGTCCCAAAAGAATTATCACAAAGACTAGTTATGAAGGAAAACTTGTAGATGATGGCACTTGCTATAATCCAAAAAGCCTATTCCCTTTGCCTCCTGATGCTAGCTCACACTTGCTTGATTCTTTTAACTTCGTCGAGGAAAGTTCTGATCAGGATTTGCTGTTAGATGTGCCGTCTAATAATTCTTTTCCACAGGCAGAACTCTTGCACCCAAATTCAAGCTATGGTGCTCAAGCCAGGACTAGTAGTAGCTCAGCATACTCACATCTTGTGAACCATTAA 1617 0.4205 MGKHGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQRASRVKSISLNKNKEVKSLKRKQNRDNVASGGGLAYDYNQGFQKAFDEDISNRSSSGSALSNSESCAQFGGTDASDLTGPAQSVVWDTTVPSKKRTCVGRSKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLYESEAPMVSVEIGHGSVLIRHPSYVARDEESEASSLSFDNRQYLMSEAYSYSGAVLTHNGSSHTNFSSQGAEKARNSAVQGIKQEQVKSDKSQIERVQILGSHDSPLSSIDLNDVVNYEEFSRNLSNEEQQQLLKFLPAVDTAKLPDSLNVMFDSSQFKENITYFQQLLVEGVFDISLSGAKPEDCKTLKRYALSNLSKSKWVEHYHFLKRCKNRAEKSDTPGSTASANFANTKRKRDSRIQNFSEVKTIMRSPKRIITKTSYEGKLVDDGTCYNPKSLFPLPPDASSHLLDSFNFVEESSDQDLLLDVPSNNSFPQAELLHPNSSYGAQARTSSSSAYSHLVNH 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00607 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 408 IPR044867 -
Trre10g00607 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Trre10g00607 538 Gene3D - 2 86 IPR013088 GO:0006355|GO:0008270
Trre10g00607 538 MobiDBLite consensus disorder prediction 518 538 - -
Trre10g00607 538 Gene3D - 287 388 IPR038108 -
Trre10g00607 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Trre10g00607 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 536 IPR044589 -
Trre10g00607 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Trre10g00607 538 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Trre10g00607 538 Pfam Asx homology domain 283 368 IPR028020 -
Trre10g00607 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Trre10g00607 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00607 Trre-Chr10 4182889 4186990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00607 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.802 9.70e-163 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre10g00607 ASXH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00607 - - gmx:100798504 829.32