Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00596 ATGTGCCGGCAAAATTCTCCGGTGCATAATTCCGGTGATGAAGAAATTGCAGCTGATGAAAGTCTTTTGGTTTATTGCAAACCTGTTGAATTCTACAATATTCTCTATCGTCGTTCTCTTCATAATCCTACTTATCTTAGGAGATGTTTGCGCTATAAAATAAAAGCAAAGCGTAAAAGGAGGGTGCGAGCAGGAATTGTGATTTTCAACTATAGGGACTGTTACAACTTGCTTCGAAAGACTGAAGTGACTGAAGACTTTTCTTGTCCATTTTGCTTGATGCAGTGTGCGAGCTTTAAGGGTTTGCGATTTCATCTTTGTGCATCACATGATCTATTCAACTTTGAGTTCTGGGTTACCGATGATTACCAAGCAGTGAACGTCTCTGTAAAAATTGACATATTGAGATCAGAGAATGTTGCTGATGGAGTAATTCCACAAACACAACCCTTCTTCTTCTGTTCAAGACCTCGAAAGCGTAGACCAAAAAGCTCTTTTAAAAATCAGAAGCACACCAATATAAAGTTCCTGAAGTTGGACTCACCAGAAGGCATGCAAAATGGGACTCTTCAGAAAGACGATGATATCATGTCATGCAAAGGGGAGAATATGTCTAGAGCATCTCATAGTGAGAAGAATTTGCAGAATGAAGGAAATGGTGGGGTAAAATTTGGTCCTGATCATCCTAGCACCATGGATTACACTGAGCATGTAGAATCTAGTTTTAACATTCAAGGTGTTTCAATTGCCATGCCCCAATCTTCGGAGGACCCTGAATGTAGCAAATCAGTATATAAAAGTGATGCTGCTCTGCCTACTAAAGCAAAAAAGTTAAATACGGACCGTTCAGACTCAAAAAACCGTATGCTCCTGCAGAAGAGGCAGTTCTTTCACTCACATAGAGTTCAGCCAATGGCATTAGAGCAAGTGTTATCAGATCGTGATAGTGAAGATGAAGTAGATGATGGCGTTGCTAACCTGGAAGATAGAAGGATGCTTGATGATTTTGTGGATGTTTCCAAAGATGAAAAGCAACTCATGCATCTCTGGAACTCTTTTATGAGGAAACAAAGGGTACTGGCTGATGGTCATGTTCCGTGGGCTTGTGAGGCATTTTCCAAGCTTCATGCAAAAGAGCTGATTTCATCCCAACCTTTATTTTGGTGTTGGAGATTATTCATGATCAAACTTTGGAATCATGGTCTACTTGATGCTTCGACAATGAACAACTGCAATATAATATTAGATAACTTCAAAAACGGGGGATCGGATACTGGCACAAATTGA 1287 0.4002 MCRQNSPVHNSGDEEIAADESLLVYCKPVEFYNILYRRSLHNPTYLRRCLRYKIKAKRKRRVRAGIVIFNYRDCYNLLRKTEVTEDFSCPFCLMQCASFKGLRFHLCASHDLFNFEFWVTDDYQAVNVSVKIDILRSENVADGVIPQTQPFFFCSRPRKRRPKSSFKNQKHTNIKFLKLDSPEGMQNGTLQKDDDIMSCKGENMSRASHSEKNLQNEGNGGVKFGPDHPSTMDYTEHVESSFNIQGVSIAMPQSSEDPECSKSVYKSDAALPTKAKKLNTDRSDSKNRMLLQKRQFFHSHRVQPMALEQVLSDRDSEDEVDDGVANLEDRRMLDDFVDVSKDEKQLMHLWNSFMRKQRVLADGHVPWACEAFSKLHAKELISSQPLFWCWRLFMIKLWNHGLLDASTMNNCNIILDNFKNGGSDTGTN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00596 428 PANTHER POLYCOMB GROUP PROTEIN 9 61 - -
Trre10g00596 428 CDD ZnB-Zn_EMF2-like 13 134 - -
Trre10g00596 428 Pfam VEFS-Box of polycomb protein 278 413 IPR019135 -
Trre10g00596 428 CDD VEFS-box_EMF2-like 291 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00596 Trre-Chr10 4091380 4097273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00596 1 68 C2H2 Transcription Factor Family AT5G51230 54.412 7.03e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00596 - - gmx:100807112 714.531