Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00589 ATGTACGGAGTAAGTTATTATGAATCCGACGTGGCTCTTTTAGAGTCGATTCGGCTTCACTTGCTTGAAGATTCCGATGTTTTTACATTCGGAGCTCCGAATAATGCTCCAATATATTGTCGGAGCTCCAGTTTCAACAACCTTAATCCATGTCTGAGTGAAAATTGGGGAGAACTTCCATTGAAAGAAGATGATTCTAATGATATGGTGCTTTACAGTGTACTTCGTGATGCCGTTAATGTTGAGTGGGTCCCATCTATTGGTGCAGGCTCACCGGAGAGTTTTATGCCGGCGGGGATTGTTAAATCGGAGCCGGAAGTTGAGAGTTTGTCTGAGATGATTGTTTCGACTCCGGTGGATGTGCCGGTGAAGGGGAAGCATTACAGGGGAGTTAGACGGCGGCCGTGGGGAAAATTTGCGGCGGAGATACGTGATCCGGCTAAAAACGGGGCGCGGGTTTGGCTTGGAACATTTGAAACGGCTGAGGATGCAGCTTTGGCTTATGATCGAGCTGCTTATAGGATGCGTGGGTCAAAGGCTATGTTGAATTTTCCGCTTCGGGTTAATTCCGGTGAGCCTGACCCGATTAGAGTGCGGCCGAAGCGGTCTTCTTCTTCTTCTTCTTCGTCAGAGTGTGGATTGTTGGTGAAACGGAGGAAGAAGGTGGTGGGGGCAATGGTGGATTGA 687 0.4847 MYGVSYYESDVALLESIRLHLLEDSDVFTFGAPNNAPIYCRSSSFNNLNPCLSENWGELPLKEDDSNDMVLYSVLRDAVNVEWVPSIGAGSPESFMPAGIVKSEPEVESLSEMIVSTPVDVPVKGKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKAMLNFPLRVNSGEPDPIRVRPKRSSSSSSSSECGLLVKRRKKVVGAMVD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00589 228 Gene3D AP2/ERF domain 126 188 IPR036955 GO:0003700|GO:0006355
Trre10g00589 228 PANTHER DNA-BINDING DOMAIN 109 207 IPR044808 GO:0003700|GO:0009873
Trre10g00589 228 SMART rav1_2 127 191 IPR001471 GO:0003700|GO:0006355
Trre10g00589 228 CDD AP2 126 185 IPR001471 GO:0003700|GO:0006355
Trre10g00589 228 MobiDBLite consensus disorder prediction 192 213 - -
Trre10g00589 228 Pfam AP2 domain 127 177 IPR001471 GO:0003700|GO:0006355
Trre10g00589 228 FunFam Ethylene-responsive transcription factor 2 126 186 - -
Trre10g00589 228 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Trre10g00589 228 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Trre10g00589 228 ProSiteProfiles AP2/ERF domain profile. 127 185 IPR001471 GO:0003700|GO:0006355
Trre10g00589 228 SUPERFAMILY DNA-binding domain 127 187 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00589 Trre-Chr10 4060069 4060755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00589 8 228 AP2-EREBP Transcription Factor Family AT4G17500 52.033 5.41e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00589 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00589 K09286 - gmx:100819649 298.901