Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00587 ATGAATTCACTCTTCTTTCTCACCCTCTTCTTCTTTTTCATCTTCCAAACCTCTGCTACCTGCAATGATGACATTCACTATCCATTTCACATAAAGGGTCAACAACAAGAGTATGATACCACTCTTTCTGGTTTTGAGCTACTTCACAAAGACAACATCACCACCATCCATTTTCCATCATATGGTGATTTAGTAGTCAAGTCCATTTCCTATGACACCAAAAAGATTGATCTTCTTGATCCAAAAAACTGTGTCCATAGAGTCTTTCTCAACCTTAACCTCACCCTTACACCATTCCAATACTACTATGTTCTCAAAAACTTTACATACATGAATTGTTCCACTACACTTTTACACACAAATTTCACTGAGATTCCATGTTTAAGTGGCTCAAGTTCTCATGTTTACACAGTTGACCCTGAAGTTCATATTCCTAGTTCTTGTAAAAAAATCAAAACCGTTGCTATACCTTTCAAATATAGCCCTTATATTTCAGACAATAGTCTTGGTCTTAGATTAACATGGAACTTGCTTGAATCTGAAGAAACCAATGAAGGAAACAAAACTAGAAATTCCCACACAGCACGTAATACAGTTATTGGCCTAAGCATGTGTTTATTGGTGATAGCAACACTTGTAAGCATAAAGGTTTATTTGTCCACAAGGAATTTCCATAAGAAAGAAGAGCAATTGTTGCATAGCGTGGCAAATTTCTAG 717 0.3612 MNSLFFLTLFFFFIFQTSATCNDDIHYPFHIKGQQQEYDTTLSGFELLHKDNITTIHFPSYGDLVVKSISYDTKKIDLLDPKNCVHRVFLNLNLTLTPFQYYYVLKNFTYMNCSTTLLHTNFTEIPCLSGSSSHVYTVDPEVHIPSSCKKIKTVAIPFKYSPYISDNSLGLRLTWNLLESEETNEGNKTRNSHTARNTVIGLSMCLLVIATLVSIKVYLSTRNFHKKEEQLLHSVANF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00587 238 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 193 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00587 Trre-Chr10 4044825 4046098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00587 26 190 C3H Transcription Factor Family AT2G25410 30.460 1.73e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00587 - - gmx:100818574 299.286