Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00583 ATGATGGTTGAAAAGGAAGATTTGGGTTTGAGCCTAAGCTTGAACTTACCTCAAAATCCACCATCAAACCCTCAATACCTTAATCTTATGTCTTCTTCAACTCATTCATCTTCTCCTTCTAGCTATAATCTCCAAAAACCATCTTGGAACGATGCTTTCACTTCTTCAGATCGGGATTCAGAAACATGCAGAAGAGAAGAACGATCTCTACTCCTCCGAGGAATCGATGTGAATCGGTTACCTTCCGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCTCCAAACAGCACGGTTTCAAGTGTGAGTGGTAAACGGAGCGAAAGAGAGGTTACTGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGATGCTGAAACATCAAGGAAAAAACTTAGACTCACTAAAGACCAATCAATTATTCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAGTTGGCACTTGCAAAACAATTGGGACTTCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAGGTAGATTGTGAGTTTTTGAAACGGTGTTGTGAGAATCTAACGGATGAAAATAGGAGGTTGCAAAAGGAAGTACAAGAGCTAAGAGCACTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCAACAACACTTACCATGTGCCCTTCTTGTGAGCGTGTAGCTGTTCCAACATCTGCGGTTGATGCTGCCACGCGTCGTCATCCTATGGTTCCAACACACCCTCGTGCATTTCCAGTGGGCCCATGGGCCACAGCTGCTCCAATACAGCAGCATAGGCCCTTTGATCCAATCAGGCCCAGATCTTAA 897 0.4303 MMVEKEDLGLSLSLNLPQNPPSNPQYLNLMSSSTHSSSPSSYNLQKPSWNDAFTSSDRDSETCRREERSLLLRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPTSAVDAATRRHPMVPTHPRAFPVGPWATAAPIQQHRPFDPIRPRS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00583 298 MobiDBLite consensus disorder prediction 91 106 - -
Trre10g00583 298 MobiDBLite consensus disorder prediction 107 137 - -
Trre10g00583 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 259 - -
Trre10g00583 298 Gene3D - 140 190 - -
Trre10g00583 298 SMART HOX_1 134 196 IPR001356 GO:0003677
Trre10g00583 298 FunFam Homeobox-leucine zipper protein 18 122 197 - -
Trre10g00583 298 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Trre10g00583 298 SUPERFAMILY Homeodomain-like 127 193 IPR009057 -
Trre10g00583 298 Coils Coil 191 228 - -
Trre10g00583 298 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Trre10g00583 298 MobiDBLite consensus disorder prediction 12 56 - -
Trre10g00583 298 Pfam HD-ZIP protein N terminus 2 110 IPR006712 GO:0005634
Trre10g00583 298 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Trre10g00583 298 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Trre10g00583 298 MobiDBLite consensus disorder prediction 85 137 - -
Trre10g00583 298 CDD homeodomain 136 193 IPR001356 GO:0003677
Trre10g00583 298 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
Trre10g00583 298 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Trre10g00583 298 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Trre10g00583 298 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00583 Trre-Chr10 4016722 4018240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00583 1 298 Homeobox Transcription Factor Family AT4G16780 64.238 1.04e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre10g00583 HD-ZIP_N 8.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00583 K09338 - gmx:100813367 436.032