Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00574 ATGGAACAAGTTTCTATCCCAATAGAAAACGAAATTGAACTAACCACTTCAATCTCTTCCTCCATTGAAAATAACAAAACCAAAGCCAAAAGTGATAATAATGGAAAACAACACCCTTTGTATCGTGGAGTAAGAATGCGTCATTGGGGTAAGTGGGTTTCAGAAATTAGAGAGCCCAAGAAAAAATCAAGAATTTGGCTCGGTACTTTTCCAACACCCGAAATGGCAGCCCGGGCTCATGACGTTGCGGCCCAAGCCGTCAAAGGTAGCTCAGCTTACCTTAATTTCCCCGAATTAGCCGAACACCTTCCACGCCCCGCCACCAATTCTCCGAAGGACATTCAAGCCGCAGCCGCCAAAGCAGCTTCAATGGACTTTCCTCATGAAGCCCAGGCCCAAGCCCAAGCCCATGACTTACAAGAATCGTCAAATTCATCTTTAACTGACGAGGATGCCACGCTGTATGACCTGCCGGATCTCTTACTCGATAAAAACAACAATTCAACTAGTGAATTATATTATTCTTCAATGCCGTGGCTTGTGGCTGGAACTGAATATTCAAACTCAGATTATGGGCTGGATGAGCCTTTACCGTGGGAGCATTATTAA 609 0.4466 MEQVSIPIENEIELTTSISSSIENNKTKAKSDNNGKQHPLYRGVRMRHWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAAQAVKGSSAYLNFPELAEHLPRPATNSPKDIQAAAAKAASMDFPHEAQAQAQAHDLQESSNSSLTDEDATLYDLPDLLLDKNNNSTSELYYSSMPWLVAGTEYSNSDYGLDEPLPWEHY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00574 202 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Trre10g00574 202 MobiDBLite consensus disorder prediction 115 148 - -
Trre10g00574 202 CDD AP2 39 99 IPR001471 GO:0003700|GO:0006355
Trre10g00574 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 164 - -
Trre10g00574 202 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Trre10g00574 202 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Trre10g00574 202 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Trre10g00574 202 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Trre10g00574 202 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Trre10g00574 202 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Trre10g00574 202 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00574 Trre-Chr10 3932288 3932896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00574 28 197 AP2-EREBP Transcription Factor Family AT2G44940 46.411 1.95e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00574 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00574 - - cam:101496929 237.269