Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00572 ATGTCAGGTGAAGAAGAGGTTGTTGCTGCAGTTGAGCCTGTTGCTGCTGCAATTCCAGGTGAGCCAATGGACATCATGACTGCTGTACAGCTTGTGCTTAGAAAGTCACGTGCTTATGGCGGTCTTGCAAGAGGTCTTCATGAAGGTGCAAAAGCCATCGAGAAGCATGCTGCACAGCTTTGTGTTCTAGCTGAAGATTGTGACCAACCTGATTATGTCAAACTGGTGAAAGCCCTTTGCGCCGAGCATAATGTTAGCTTGTTGACAGTTCCAAATGCTAAAACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCAGAAGGTAAAGCTAGGAAGGTTACTGGTTGCTCTTGTGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTTTGCAGCATGTGAAAGCTAACTGA 429 0.4569 MSGEEEVVAAVEPVAAAIPGEPMDIMTAVQLVLRKSRAYGGLARGLHEGAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00572 142 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 28 121 IPR004038 -
Trre10g00572 142 PRINTS Ribosomal protein S12E family signature 46 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre10g00572 142 PRINTS Ribosomal protein S12E family signature 87 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre10g00572 142 PRINTS Ribosomal protein S12E family signature 112 125 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre10g00572 142 PRINTS Ribosomal protein S12E family signature 32 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre10g00572 142 FunFam 40S ribosomal protein S12 8 142 - -
Trre10g00572 142 PANTHER 40S RIBOSOMAL PROTEIN S12 16 141 - -
Trre10g00572 142 SUPERFAMILY L30e-like 22 140 IPR029064 -
Trre10g00572 142 Gene3D - 5 142 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00572 Trre-Chr10 3912901 3913875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00572 18 142 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 73.600 2.30e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00572 K02951 - gmx:100500093 254.603