Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00555 ATGGAGAAGTACAAATGCAAGCTTTGCACAAGAGCATTAGGCAGTAGCAGAGCATTGGGTGGACACATGAAGGCTCATTTTCATTTTGCAAACTTCCCTCTTCCTCCTCCTCCCTCCGAAGATGAACGATCCGAGCGAAACCGAAAACTCACCTTTAGCCAAAACTCAGAACAAAAGAAACTTAAACAATGTTTTTTAGATTCATATTCACCACTAACTGAAACTGAACCAGAAAAGGTTAGTTCAATTTCTGATACTTCCCCTGAAGAAGTTGCTGTAACCCTCATGTTGCTATCAAGAGATAAATGGGAGAAGAAGAAGAAGAACAATGTTGTTGACAAAGAAGAAGCACAAGAAGTTGAAAGATCAATGAGATTAATGGAAGAGATTAAGCTCAAAAAAGTTAGTGGGAAGCAAAAATGTGACAAATGTGGGAATAACTTTGGAAGTTCTAGAGCATTGGAAGGTCACAAAATCATTTGTCTTCAAAATGAAGCAAATCTGGTTGCAGCAACTAGTAATAGTGATCACAAAATATTCCAATGTATGATTTGTTTTAAGATTTTTGGGTCTGGTCAAGCATTAGGTGGTCACAAGAGATCTCACTTTTATCCATCTTTGAAGAAAAAACTTTGTTTCTTCGATCTCAACTCGCCACCTTCACCCGAAGAAGACGATCCTGTTTTTTTTTATGCCTAG 699 0.3791 MEKYKCKLCTRALGSSRALGGHMKAHFHFANFPLPPPPSEDERSERNRKLTFSQNSEQKKLKQCFLDSYSPLTETEPEKVSSISDTSPEEVAVTLMLLSRDKWEKKKKNNVVDKEEAQEVERSMRLMEEIKLKKVSGKQKCDKCGNNFGSSRALEGHKIICLQNEANLVAATSNSDHKIFQCMICFKIFGSGQALGGHKRSHFYPSLKKKLCFFDLNSPPSPEEDDPVFFYA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00555 232 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 59 IPR044303 GO:0006355
Trre10g00555 232 Pfam C2H2-type zinc finger 140 158 - -
Trre10g00555 232 Pfam C2H2-type zinc finger 4 26 - -
Trre10g00555 232 Pfam C2H2-type zinc finger 180 202 - -
Trre10g00555 232 SUPERFAMILY beta-beta-alpha zinc fingers 140 202 IPR036236 -
Trre10g00555 232 Gene3D Classic Zinc Finger 136 202 - -
Trre10g00555 232 SMART c2h2final6 139 159 IPR013087 -
Trre10g00555 232 SMART c2h2final6 180 202 IPR013087 -
Trre10g00555 232 SMART c2h2final6 4 26 IPR013087 -
Trre10g00555 232 MobiDBLite consensus disorder prediction 32 56 - -
Trre10g00555 232 MobiDBLite consensus disorder prediction 39 55 - -
Trre10g00555 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 33 IPR013087 -
Trre10g00555 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 202 IPR013087 -
Trre10g00555 232 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Trre10g00555 232 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00555 Trre-Chr10 3815653 3816351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00555 1 231 C2H2 Transcription Factor Family AT3G60580 30.717 1.16e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g00555 zf-C2H2_6 7.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00555 - - tpra:123910253 311.612