Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00553 ATGCAACATTCTATAATGGCTAAGACTACTCTTTTCTATTTGTTGCAATTGCTTTTGATTTTCACTTGCATGTTGTTAAATGCAGGAGTAATGACATTAGGTGCACGCCATCATCACGACGCTACCTTCAACTATTTATCTTCTTCAAACTCTTCCGAGCACCATTGGATCGGACCTATCGGTAATCGTGTAATAACGGTTGATATTAACGGTGGAGGCCAGTTCCAGTCCGTCCAAGACGCCGTCAATGCTGTCCCGGACAACAATACAATGAACGTGCTTATTCAAATAAGCGCAGGATGCTACAAAGAGAAGGTGGAGGTTCCCGTGACGAAACCGTACATAACATTTCAAGGAGAGGGAAGGGATGTAACGGTTATAGAATGGCATGATAGAGCTTCTGATCCTGGTCCCAATGGACAACAACTTCGTACTTATCGAACTGCTTCTGTTACTGTCTTGGCCAACTATTTCTCTGCTAAGAATATCACCTTCAAGAATACAGCTCCGGCGCCAAAGCCAGGGATGGAAGGATGGCAAGCGGTTGCGTTTCGCATATCAGGGGACAAAGCATACTTTTCCGGCTGTGGCTTCCACGGCGCACAAGACACACTTTGTGATGATGCTGGTAGGCATTATTTCAAGGAATGCTACATTGAGGGCTCCATTGATTTCATTTTTGGAAATGGCAGATCCATGTACAAGGATTGCGAGCTACATTCAATAGCAACGAGGTTTGGATCGATAGCAGCCCATGATAGGAATTACCCATATGAGAAGACAGGATTCGCATTCGTACGATGCAAAGTGACAGGTACGGGCCAATTATATGTGGGCCGTGCAATGGGCCAATACTCGAGAATAGTCTACGCATACACATACTTTGATAATATAGTTGCACCCGGCGGTTGGGATGATTGGGACCATGCCAACAACAAAAACAAGACCGTGTTCTTTGGAGTGTACAAGTGTTGGGGACCAGGAGCAGAGGCAGTACGTGGGGTATCATGGGCCCAAGAGTTGGATTTTAAATCTGCACATCCATTTATAAGGAAGAGCTTCGTCAATGGGAGACATTGGATCGCACCAGCTGATGCTTAG 1101 0.455 MQHSIMAKTTLFYLLQLLLIFTCMLLNAGVMTLGARHHHDATFNYLSSSNSSEHHWIGPIGNRVITVDINGGGQFQSVQDAVNAVPDNNTMNVLIQISAGCYKEKVEVPVTKPYITFQGEGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVLANYFSAKNITFKNTAPAPKPGMEGWQAVAFRISGDKAYFSGCGFHGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRNYPYEKTGFAFVRCKVTGTGQLYVGRAMGQYSRIVYAYTYFDNIVAPGGWDDWDHANNKNKTVFFGVYKCWGPGAEAVRGVSWAQELDFKSAHPFIRKSFVNGRHWIAPADA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00553 366 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Trre10g00553 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 57 362 - -
Trre10g00553 366 FunFam Pectinesterase 61 363 - -
Trre10g00553 366 Gene3D - 61 365 IPR012334 -
Trre10g00553 366 Pfam Pectinesterase 65 357 IPR000070 GO:0030599|GO:0042545
Trre10g00553 366 SUPERFAMILY Pectin lyase-like 62 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00553 Trre-Chr10 3790990 3794071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00553 15 366 Carbohydrate Esterase AT5G47500 71.549 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00553 - - cam:101501763 669.463