Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00549 ATGGAAGAACAGAACGAAGAACACGAAAAGCGAGAACTCTACGCAGTCTTAAACTTATCACCCGAAGCTTCCGATGAAGAAATTCGCAAAGCTTATCGTCAATGGGCACAAGCTTATCACCCTGATAAGTACCAAAATCCTCACATGAAAGATGCTGCTACTGAGAATTTTCAACGAGTTTGTGAAGCGTATGAGATTTTATCAGATCCAAATAAAAGACAAATTTATGATATCTATGGTATGGAAGGGTTGAAATCTGGTTTGGAACTTGGTCCAAGGCTTGATAGAGCTGAAGAGATTAAAGCTGAATTGGATAGATTGAAAAGAATGAGGGAACATGAAAAGATGATGGCACATTTCCGATCTTCGGGTACAATTATCACTAATATGTCTTTGCCACGATGTCTAGATGGTGATGGTCTCTTCAAAGGAATGGCGATGACGAGTGAAATTCAGTCTCAGTTGTCAAAACGAAATGTTGTTGCGATTGGTGGAAATTTAGCAGTTGATGGACATGATGGTGGTGGAGCTGCTAATGCTGTATTAAGTCATCAACTTTCAGAAGTTCAGTCAATAGAATTTATGGCTTCGGCGGGTTTACGTTCACTACTTGGGGTGCAGACATCTCGGCATATATCATCACACTCATCTGCAACAATAGGCTTATCAATGTCTTTGAAAGATGGTTCTTTGAATCTTTCTAATGCATGGACCCGCCAACTGTCAGAAACCACAAACGGACATATACAACTCATGTTGGGATCACAATCATCTGTAGCCGTAGGGTGGCAGAAAAAAGATGAGAAACGGACTGCCACTGGAGAAGTGAAGTTGGGCACAGGTTCTTTTGAGACAGCAGTTCAGTATACTCATCGCTTTTCTTCTAAATCTCATGGCAGCATTGGAGGAAGAGTTGGGAGTTCTTCCATTGAGATGGAGGTCGGTGGTGGAAGGAAGTTATCCAAATTCAGTTCTGTGCGTTGGATGTATGTAGTAGGTTTGCAGGGCATTTCCTGGAGATTTGAACTCCATCGTGGGGGCCAGAAGTTGATTATTCCTATTTTGCTGACGAGTTATTTGAACCCAGTGTTTGCTACTGGAGCATTAGTCATTCCAGCATCTTTTTACTTTGTTCTGAAGAAATTTGTCATTAAACCCTATTACCTTAAAAGGAATAAGCAGAAGGCTCTGGAGAAAGAGGGTAAAAGTTCTGCTCAGGTTCAAGAAGGAAGGGCGGCAGCAGAGAAAGCTCAGAAATTACAACAAAATGTGGCTAATAGGAAAAGAAATAGGCAATTAGAAACAAATGGACTGGTTATTATGAAAGCGCTATATGGAAGTAATACAATTTTGAACAACTTGTATTCATCAAGTGATACAAGTTTTGAATCTACTTCAGGAGTCATTGATGTTACAACGCCTCTGAATTTTCTAGTCAATGACTCTGCTCAACTTAAGCTTCACGAAGGTGTAAAGAAATCAGGAATCATGGGCTTTTGTGATCCTTGTCCCGGAGACCAGAAACTGTTGTATGTAGAGTATGCTTATGCCGGCAACCAACACAAGGTCTTGGTCGGTGACTATGAAGAATTACTGATACCCCAGGGCATCCACAGGATATAA 1623 0.4097 MEEQNEEHEKRELYAVLNLSPEASDEEIRKAYRQWAQAYHPDKYQNPHMKDAATENFQRVCEAYEILSDPNKRQIYDIYGMEGLKSGLELGPRLDRAEEIKAELDRLKRMREHEKMMAHFRSSGTIITNMSLPRCLDGDGLFKGMAMTSEIQSQLSKRNVVAIGGNLAVDGHDGGGAANAVLSHQLSEVQSIEFMASAGLRSLLGVQTSRHISSHSSATIGLSMSLKDGSLNLSNAWTRQLSETTNGHIQLMLGSQSSVAVGWQKKDEKRTATGEVKLGTGSFETAVQYTHRFSSKSHGSIGGRVGSSSIEMEVGGGRKLSKFSSVRWMYVVGLQGISWRFELHRGGQKLIIPILLTSYLNPVFATGALVIPASFYFVLKKFVIKPYYLKRNKQKALEKEGKSSAQVQEGRAAAEKAQKLQQNVANRKRNRQLETNGLVIMKALYGSNTILNNLYSSSDTSFESTSGVIDVTTPLNFLVNDSAQLKLHEGVKKSGIMGFCDPCPGDQKLLYVEYAYAGNQHKVLVGDYEELLIPQGIHRI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00549 540 Coils Coil 97 117 - -
Trre10g00549 540 Gene3D DnaJ domain 1 90 IPR036869 -
Trre10g00549 540 Pfam DnaJ-like protein C11, C-terminal 386 534 IPR024586 -
Trre10g00549 540 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Trre10g00549 540 PANTHER CHAPERONE PROTEIN DNAJ 13 1 540 IPR042162 -
Trre10g00549 540 SUPERFAMILY Chaperone J-domain 9 91 IPR036869 -
Trre10g00549 540 Pfam DnaJ domain 13 77 IPR001623 -
Trre10g00549 540 CDD DnaJ 12 69 IPR001623 -
Trre10g00549 540 PRINTS DnaJ domain signature 32 47 IPR001623 -
Trre10g00549 540 PRINTS DnaJ domain signature 52 72 IPR001623 -
Trre10g00549 540 PRINTS DnaJ domain signature 14 32 IPR001623 -
Trre10g00549 540 PRINTS DnaJ domain signature 72 91 IPR001623 -
Trre10g00549 540 SMART dnaj_3 11 72 IPR001623 -
Trre10g00549 540 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00549 Trre-Chr10 3763344 3771733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00549 9 77 C2H2 Transcription Factor Family AT1G74250 48.000 1.50e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00549 K09531 - gmx:100817782 855.129