Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00521 ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGCTTCCATCCCACCGATGAAGAACTCGTTGATCACTACCTTAGAAAAAAGATAGCTTCCAAAAGAATTGATCTTGATATTATTAAAGATGTTGATCTCTATAAAATTGAACCATGGGACTTGCAAGAATTATGCAAAATAGGAAGTGATGAACAAACAGAATGGTATTTCTTCAGTCATAAAGATAAGAAATATCCAACTAGCAGTCGTACAAATAGAGCTACAAAAGCTGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTACTCTAACCATATTTCTTTGATTGGAATGAGAAAGACTCTAGTTTTCTACAAAGGAAGAGCACCTAATGGACAAAAATCTGATTGGATTATGCATGAATATCGTTTAGAAACTAATGAAAATGGAACTACTCCTCAAGAAGAAGGATGGGCTGTGTGTAAAGTGTTCAAGAAAAGAATAGCTGCAACAATGATGAGGAGAATGGATGATTCACCATGTGGATATGATGATCAAGTATCATTCATGCAATCAGAGTTTGAATCTTCCCCAAATAGAATTTCTCATGCATCATACCAACAACATTACCCTTGCAAACAAGAATACTATGATAGATTTCAATACAATATAGCCATTAATGATGCTAATAATTTCCTTCAACAACTTCCACAACTCGAAAGCCCTAAAGTTCCTAATAATTTTCATTGTTCATCATCATCATCATCACATTCACTCACTACTACTCATCAAGAACAACAATATTATAGCCAGCAACAAAATATGCAAATGCTTTATGGTGGTGGAAATAGCAATAATGATAATCAAGCTGCAGGATTAGTGGAGCAATCAAGGGATTGGAGAGTACTTGATAAATTTGTTGCTTCTCAGCTAAGTCATGATCAAGATGCTTCTAAGGAAAGTACTAGTTATTGCAATGTGGATGAACAAATTGCTTTGCTAGCAAATGATGAGTCAAAAAAATCTGAAACTAGTCAGATTGACATGTGGAAGTGA 1032 0.3498 MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHISLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWAVCKVFKKRIAATMMRRMDDSPCGYDDQVSFMQSEFESSPNRISHASYQQHYPCKQEYYDRFQYNIAINDANNFLQQLPQLESPKVPNNFHCSSSSSSHSLTTTHQEQQYYSQQQNMQMLYGGGNSNNDNQAAGLVEQSRDWRVLDKFVASQLSHDQDASKESTSYCNVDEQIALLANDESKKSETSQIDMWK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00521 343 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Trre10g00521 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 277 - -
Trre10g00521 343 MobiDBLite consensus disorder prediction 240 259 - -
Trre10g00521 343 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
Trre10g00521 343 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Trre10g00521 343 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Trre10g00521 343 FunFam NAC domain-containing protein 16 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00521 Trre-Chr10 3536110 3538106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00521 1 338 NAC Transcription Factor Family AT1G62700 54.103 7.52e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g00521 NAM 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00521 - - zju:107405051 416.772