Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00503 ATGAATTACTTCTATCTCCTTCTTTCTTTGTTTCTATTGATTGCATTTTCAAAACCAGAAACGGTTTGTGGAAATGCAGAGCTAAGGGCTTTGATGGATTTGAAAACTTCTCTTGATCCAGAGGGAAAGATTCTTACTTCATGGATCAGTGATGGTAATCCATGTAGTGGTTCATTTGAAGGAGTTGCTTGTAATGAACATTGGAAAGCGGCTAATATATCTTTGCAAGGAAAGGGACTTTCTGGTTGTTTATCTCCAGCTGTGGCTGAACTCAAATGCTTGTCAGGGTTATACTTGCATTATAATAATCTTTCTGGTGAGATACCATCACAAATTTCAAATCTTACTGAACTTGTTGATCTTTATCTTGATGTTAATAGTCTTTCTGGAACAATTCCTCCTGAGATTGGAAACATGGCTAGTCTCCAAGTACTTCAGTTGGGAGATAATCAATTGGTGGGTAATATACCTACACAGATGGGTTCCTTGAAGCAGCTTACAACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTATTAGCTTAGGGAACTTGGAGAATCTAAGCAGGCTAAATTTGAGTTTCAACAATTTCAGTGGTCCTTTTCCAGCAACACTAGCCAATGTTGCACATTTGGAAATTCTGGATATTCAAAACAATTCTCTATCAGGAACTGTTCCTTCTGCATTGAAGAGACTCGGGGAAGGATTCCAAGGGGCAAACAATGAAGGTTTATGTGGAGTAGATATTTTTACTTTGAGAGCATGCAACAAGAATTCAGATTTCAATGTCAGCGACATTGATACCTCGGATCAAGACCACCTCAAAAATGGTAATCCCGCATCGCCTCGCCCAGAGGCTGCAGATGTCCAAATGCACTGTAACAAGACTAACTGCTCAAAATCAAGGTTTCCTGTAAGTATCATCACAGCAGCAAGTGTTGTAATCCTCACTCTCACATTCATTGGTGTTGGATTGTTTGCATTTGTGAAATACCGCCGTCAAAAGCAGAAGATTACATCGAGCATTTCTGAAGGGAAACTTAGTCCTCAGCAGCCTAAAGAGTTATACAGAAAAAGTCCATCCACCCTTGTTAATCTTGACTATTATAACGGATGTTATCCAATGCCTGATAATCAAAATGCTGGAGGATTATACAGTGAATATCTAAACCAATTTAGGTTTAATGTAGATGAAGTCGAATCTGCAACGCAATATCTTTCAGAAGCAAATTTATTGTGTAAGAGCAAATTCTCAGCAATGTATAAAGGAATTCTCAGAGACGGTTCTCTTGTCGCTATTAGAAGCATTAACATGACATGCTGCAAAACCGAGGAAGCCGAATTTGTAAAGGGACTGAGCTTATTAACCTCACTTAAACATGAAAACATTGTTAAGCTAAGAGGTTTCTGTTGCTCAAGTAGTAGAGGTGAATGTTACCTTATTTACGACTTTGCAACGATGGGATACCTATCTCAATACCTTGACATAGAGGATATAAGTGGCCATTTGCTTGACTGGTCCAAGAGGGTTTCCATCATCAAAGGCATTGCAAAAGGTATAGGATATCTGCACAGCGACGAAGCAAGCAAACCTTCAATAGTACACCAGAATATATCAGTGGAGAATGTTCTCCTTGACAAAGAGTTTAATCCATTGATCATGGATGCTGGACTTCCTAAGCTTCTCGCAGACGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCCGCCATGGGATACCTAGCTCCTGAATACATTACTACAGGACGCTTTACCGAGAAGAGTGACATATACGCATTTGGAGTTATTGTACTTCAAGTTTTATCTGGCAAGACAGCAATCGGTGGTTCAATACGGACAGCATTCGAGTCTCTTCGATTTGATGATTGCATCGACACAAATCTTAAGGGAAGATATTCTAGTTCTGAAGCAACGACGCTTACAAAGCTTGCAGTGCAGTGTGTCCATGAGAATCCCGACGAAAGACCAAGCATGGTGGATGTGATTCAGGAGCTAAGGGTGTTTCCGGCTAATTCATAA 2046 0.3974 MNYFYLLLSLFLLIAFSKPETVCGNAELRALMDLKTSLDPEGKILTSWISDGNPCSGSFEGVACNEHWKAANISLQGKGLSGCLSPAVAELKCLSGLYLHYNNLSGEIPSQISNLTELVDLYLDVNSLSGTIPPEIGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLTGQIPISLGNLENLSRLNLSFNNFSGPFPATLANVAHLEILDIQNNSLSGTVPSALKRLGEGFQGANNEGLCGVDIFTLRACNKNSDFNVSDIDTSDQDHLKNGNPASPRPEAADVQMHCNKTNCSKSRFPVSIITAASVVILTLTFIGVGLFAFVKYRRQKQKITSSISEGKLSPQQPKELYRKSPSTLVNLDYYNGCYPMPDNQNAGGLYSEYLNQFRFNVDEVESATQYLSEANLLCKSKFSAMYKGILRDGSLVAIRSINMTCCKTEEAEFVKGLSLLTSLKHENIVKLRGFCCSSSRGECYLIYDFATMGYLSQYLDIEDISGHLLDWSKRVSIIKGIAKGIGYLHSDEASKPSIVHQNISVENVLLDKEFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESLRFDDCIDTNLKGRYSSSEATTLTKLAVQCVHENPDERPSMVDVIQELRVFPANS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00503 681 Pfam Protein tyrosine and serine/threonine kinase 414 674 IPR001245 GO:0004672|GO:0006468
Trre10g00503 681 FunFam Protein NSP-INTERACTING KINASE 2 488 678 - -
Trre10g00503 681 SUPERFAMILY Protein kinase-like (PK-like) 384 675 IPR011009 -
Trre10g00503 681 FunFam Protein NSP-INTERACTING KINASE 2 380 487 - -
Trre10g00503 681 Gene3D Phosphorylase Kinase; domain 1 381 487 - -
Trre10g00503 681 Gene3D Transferase(Phosphotransferase) domain 1 489 677 - -
Trre10g00503 681 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Trre10g00503 681 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Trre10g00503 681 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Trre10g00503 681 Gene3D Ribonuclease Inhibitor 180 245 IPR032675 -
Trre10g00503 681 SUPERFAMILY L domain-like 23 233 - -
Trre10g00503 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 74 674 - -
Trre10g00503 681 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Trre10g00503 681 ProSiteProfiles Protein kinase domain profile. 409 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00503 681 MobiDBLite consensus disorder prediction 269 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00503 Trre-Chr10 3413377 3416556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00503 6 522 Miscellaneous Gene Families AT4G22730 55.888 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre10g00503 PK_Tyr_Ser-Thr 4.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00503 - - gmx:100777169 1023.85