Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00486 ATGGAGATTGATGGTGGTGATAAGAGTAATGGAAATCGAAAACGGAAAAGAGGGTCGTTGAAAAGAAAGCTTCTTGTTAATGAAAAAGTTGAGTTGAGGAGTTTGGAAGATGGTTTTTTGGGATCATGGCATCCGGGAAAAATTGTTCGCTGTGGGAGGAAGAAACGATATGTCAAATATGACAATATCCTCAATGATGATGAATCAGATTATCTTGTTGAAGTGGTGACTGTTTCTAGTGTTTTGGATGGTGTTAATCTTTCACCTGGTTCAGATTGTGTTTATGAACGCGGCCTAATTAGACCATTGCCTCCTCCAATTGAGTTACGGATGAAGGATCTTCCATTTGGACTCTGTATTGATGTGAATTATCAAGACGCTTGGTGGGAAGGTGTGATATTCGATCACTGTGATGGAACGAAGGAGAGGAGCATATTCTTCCCTGATTTGGGTGATGAAATGAAGGTTGGAGTTAAACAATTAAGGATCACTCAGGATTGGGATGAATCAACTGAGAATTGGTTACCAAGAGGAAAATGGGTTTTTCTTGAGTTGTTTGAGGAGTGTGAGAGGGTTTCCTATGTTGCTGTCTCGGTGAAACAGATTTGGTATGATGTTAGGATGAGAAAGGATTTTGCTGAAACCATTAAAGAATGGACTTGTAATGTGAAGGAGTTGTGGAGAGACATGGTTGTCGAGGTGATTGGTGATTACTATACCCTCACTCTAAATGAAGTTCGCCTCGCATTAAACCTTCCGAAGAATTTACTCGAAGGAGGGTCATTTGAACTATCTGATAATGTTCATTGTGATGTTGCTAGTCATGTTAATACAATTGGTTCTGACATAGCTAATAGGCCCAAGGAAAATGGGGACTCCTCAAACATGTTGGATGCTGATCAAAACATGCTGGATGGGGAAGTTGAGAAGGAAAGTCTTTTACATGAAGAGTTTGAATCACAAAAAGAAATTTCCTGCTATCGGGGTGATGTAATAGATTCGGATAAAAACCGAAGACGCAGACGCTCTACGTCAATAATTTGGAAACCTTTGATACTATCTGAAGTTGAATTCTGTCCTGAAGTTATTAATGAGTATGCAGTTGGATGTAGGAGCAAGACGGTTCGAGAACATTTGAAGACGAAAGTTAGAAAACATCTTGCATATCTTGGATGGACAATTGAATGGACCGAAAACAACTGTCCTCAAAATAGACGGTACAGGTACAAGTCACCGGATATACGTGACCAGAAGTTTTACACTTCAATTTTTAAGGTTACTAAAGTTTTGCAAGAGGATTCCAACATGAACTCTGTGCCACCCCAAATTGGCGGAAATCTTTCACATCTTCTTTGCGATCCACCACAAATGGACCGAGATTTGGATGTTTGTCCTCCGACTAAGGATTCTTCTACAATTAATATTCAAGCTGAGCCAGAATTATGTCCTCTAGCCATCGTGAAATACTACTTTCACTCATTAGAGAGAAACTCGGCTGATAAGATAAAGTGGAAGTTGAAGGCGAAAAAACATCTGTTAGCAGAAGGATGGATCTTTGACTACCCAACTGAAAGAAGGAAGACAACTTTGTACAAGTCTCCACAGAATCAGTGTTTAGGTACACTTCAAGGTGCATGCAGACTATACCTTAAAGAAAAAATTCCTGAATGGACTAATTCTGATCAAGTTAATGGTGATGATCTATTGCCGAGTGTGTTCCAATTGCTTCAAAAGGAGCCTGAATTACATACTATAGATGGTACACCACCAACTTCAAAGAGAAACCATAAACGCACAAGGACTTCAAAGGCTAGCACACAAAAGGGCTTAGAGAATGAAGTACCTACTCGGGTACTAAGATCGAGCAAAAGGGTGCAGAAGGCTTTGGGTTTGTCACATCAAAAGCCACAAAATGTTTTGTCTTGGTTAGTAGATTACAACATTGTGTTACCAAAATTCAAGGTCTTTTACCGGGAAATAGAAGGAGAAGGAAACTCCCCCACGGCTGAGGGGAGGATAACCCGTGAAGGAATCAAATGCAACTGTTGTCAAAACATATATGGACTCAGCGGCTTTGCAAACCATGCTGGTGGAAGTAGTAACTGCAGGCCTTCGACTTGTATCTTTTTGAAGGATGGTAGGTCACTGTTAGACTGCATGAGGGAAGTAATGCAAGATCACAAGGCAAGGGAAGTCATGGAGGAACCATGCAATTATCTGTTTGAAGGCGAAAATGACAACATTTGTTCTGTTTGTAATTACGGTGGTGAACTTATTTTATGCGACCAATGCCCCTCAGCATTTCATAAGAATTGTCTTAATTTGGAGGACATCCCTGATGGTGATTGGTTTTGTCCATCATGCCGTTGCGGGATTTGCAGCCAAAACAAAATTGAAAAGACCGATGATGGACATTTTCTTACTTGCATTCAGTGTGAATATAAATATCATGTTGTGTGCCTCAGAAATAGAGAAAACGATAATTCAAGACGATATCAGGAAAATTGGTTTTGCGGAGAAGAGTGTGTAAGGGTGTATATGGGGCTTCAAAATCTATTGGGAATGCCGGTTTTAGTGGGCGAGGACAATCTAACTTGGACATTGTTGAAGTATGTCAACTCTGAGAATAGTGGTGTTAGCAATGCTGAAAATGACTTAGTAGCAGAGACTTACACTAAACTCAGTGTTGCACTTTCGGTGATGCACGAATGTTTTGAGCCGTTACATAACTCGTTCTCTAGCAGGGATATCGTGGAAGATGTTATATTCAACAAAAGGTCTGAGCTCAACCGGTTGAATTTCCAGGGTTTTTATACCATACTTCTAGAGAGAAATGAAGAGTTGATTAGTGTGGCAACTATTAGGATATTTGGAGAGAAGATAGCAGAAGTGCCCCTTGTCGGTACAAGATTTCAGTATAGACGACTTGGAATGTGTCGTGTTTTAATGGATGAGCTTGAAAAGAAACTAAAGCAACTGGGAGTGGAGAGACTAGTCTTACCTGCTGTTCCTGGTGTGCTTGAAACTTGGACCAGTTCTTTTGGTTTTAAGCAGATGACAAACTTCGAGCGATCGCAGTTTTTGGACTACTCATTCCTAGATTTCCAAGGAACAGTGATGTGTCAGAAACTGTTGTCAAGACATCCATCTCCGGAGTCAGATGTGACTAGAGATGCAACAACTCCGAAACAAGATGGTGGCTTTTCTGTAAAATGTAAAATTAATTTTGAAAAGGCTAGTCCGGTTTATGAAGCCGATCAAACTGAAGGGATTGACGAGAGTAGTACAACGGATTTACAAGTTTGGAGACCAATGCCTGATTCCTAG 3327 0.4046 MEIDGGDKSNGNRKRKRGSLKRKLLVNEKVELRSLEDGFLGSWHPGKIVRCGRKKRYVKYDNILNDDESDYLVEVVTVSSVLDGVNLSPGSDCVYERGLIRPLPPPIELRMKDLPFGLCIDVNYQDAWWEGVIFDHCDGTKERSIFFPDLGDEMKVGVKQLRITQDWDESTENWLPRGKWVFLELFEECERVSYVAVSVKQIWYDVRMRKDFAETIKEWTCNVKELWRDMVVEVIGDYYTLTLNEVRLALNLPKNLLEGGSFELSDNVHCDVASHVNTIGSDIANRPKENGDSSNMLDADQNMLDGEVEKESLLHEEFESQKEISCYRGDVIDSDKNRRRRRSTSIIWKPLILSEVEFCPEVINEYAVGCRSKTVREHLKTKVRKHLAYLGWTIEWTENNCPQNRRYRYKSPDIRDQKFYTSIFKVTKVLQEDSNMNSVPPQIGGNLSHLLCDPPQMDRDLDVCPPTKDSSTINIQAEPELCPLAIVKYYFHSLERNSADKIKWKLKAKKHLLAEGWIFDYPTERRKTTLYKSPQNQCLGTLQGACRLYLKEKIPEWTNSDQVNGDDLLPSVFQLLQKEPELHTIDGTPPTSKRNHKRTRTSKASTQKGLENEVPTRVLRSSKRVQKALGLSHQKPQNVLSWLVDYNIVLPKFKVFYREIEGEGNSPTAEGRITREGIKCNCCQNIYGLSGFANHAGGSSNCRPSTCIFLKDGRSLLDCMREVMQDHKAREVMEEPCNYLFEGENDNICSVCNYGGELILCDQCPSAFHKNCLNLEDIPDGDWFCPSCRCGICSQNKIEKTDDGHFLTCIQCEYKYHVVCLRNRENDNSRRYQENWFCGEECVRVYMGLQNLLGMPVLVGEDNLTWTLLKYVNSENSGVSNAENDLVAETYTKLSVALSVMHECFEPLHNSFSSRDIVEDVIFNKRSELNRLNFQGFYTILLERNEELISVATIRIFGEKIAEVPLVGTRFQYRRLGMCRVLMDELEKKLKQLGVERLVLPAVPGVLETWTSSFGFKQMTNFERSQFLDYSFLDFQGTVMCQKLLSRHPSPESDVTRDATTPKQDGGFSVKCKINFEKASPVYEADQTEGIDESSTTDLQVWRPMPDS 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00486 1108 SUPERFAMILY FYVE/PHD zinc finger 728 789 IPR011011 -
Trre10g00486 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 845 IPR013083 -
Trre10g00486 1108 SMART agenet_At_2 22 86 IPR014002 -
Trre10g00486 1108 SMART agenet_At_2 112 169 IPR014002 -
Trre10g00486 1108 MobiDBLite consensus disorder prediction 1084 1108 - -
Trre10g00486 1108 SMART PHD_3 748 789 IPR001965 -
Trre10g00486 1108 SMART PHD_3 790 842 IPR001965 -
Trre10g00486 1108 CDD Tudor_Agenet_AtDUF_rpt1_3 26 105 - -
Trre10g00486 1108 CDD PHD2_CHD_II 749 788 - -
Trre10g00486 1108 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 884 1045 IPR000182 GO:0016747
Trre10g00486 1108 Pfam PHD-finger 748 790 IPR019787 -
Trre10g00486 1108 Pfam Tify domain binding domain 671 722 IPR032308 -
Trre10g00486 1108 MobiDBLite consensus disorder prediction 583 617 - -
Trre10g00486 1108 Pfam Agenet domain 28 105 IPR008395 -
Trre10g00486 1108 ProSiteProfiles Zinc finger PHD-type profile. 746 791 IPR019787 -
Trre10g00486 1108 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 931 1028 IPR016181 -
Trre10g00486 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 790 IPR013083 -
Trre10g00486 1108 MobiDBLite consensus disorder prediction 1048 1068 - -
Trre10g00486 1108 Gene3D - 897 1042 - -
Trre10g00486 1108 PANTHER PHD FINGER PROTEIN 12 487 1088 IPR042163 GO:0003714|GO:0045892
Trre10g00486 1108 CDD NAT_SF 940 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00486 Trre-Chr10 3263871 3271575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00486 24 993 PHD Transcription Factor Family AT5G58610 36.757 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre10g00486 Agenet 1e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00486 - - gmx:102661511 1344.72