Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00483 ATGGATCAAATAACAGCACATGGACATTCACTTCCTCCACCTTTCCACACAGCAAGAGATCTTCATCTTCACCATCAACATCAACACCAACAGCAGCAGCAGCAACAACAACAGCATCATCAATTCCACACTTTACAACAGCAACCAGATCAAGATGAACAAAGTGGAAGCAGTAGCGGTGGTGGCCTTAACCTCACGAACCGCGAAGAAAACAGCCACAAGTTCACCGATTTTAGTAGCCCGAAATTAGAATCCGGAGGAGGAGGTTCCGGTGGTGACACAGATTCAATGACTAGAAGACCAAGAGGAAGACCAGCTGGATCTAAAAACAAACCAAAACCACCAATCATCATCACACGTGATAGCGCAAACGCGCTAAAAACTCACGTGATGGAAGTTGCAGACGGTTGTGATGTCGTTGAAAGTGTTAACAACTTCGCTAGACGCCGTCAAAGAGGCGTCTGCATCATGAGTGGGACCGGAACGGTCACAAATGTTACGCTAAGGCAGCCTGCATCGCCTGGAGCGGTAGTTACTCTTCATGGAAGATTTGAGATTCTTTCGCTAGCTGGATCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGGATTGACGATATATTTAGCGGGCGGACAAGGGCAGGTAGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCTGTTGTTATTATGTCTGCTTCTTTTAGTAACGCTGCTTATGAAAGACTACCTTTGGAAGAAGATGATGCTACTTCTTTGCAACAACTTCAAGGTGGTGGTGGTGGTGGTTCTCCAAGTGGTGGTGGTGGTGGTGTTCAGCAAACACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCACCTCCTAATCATAATCCTAATGCTAATCTTCTTAATTCTGTTCAAATGCCTTCTGATAATTTCTGGCCAACCGGTCGTTCTCCTTATTGA 969 0.4623 MDQITAHGHSLPPPFHTARDLHLHHQHQHQQQQQQQQQHHQFHTLQQQPDQDEQSGSSSGGGLNLTNREENSHKFTDFSSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEEDDATSLQQLQGGGGGGSPSGGGGGVQQTQLLGDSTAPLFQAMPPPNHNPNANLLNSVQMPSDNFWPTGRSPY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00483 322 MobiDBLite consensus disorder prediction 295 322 - -
Trre10g00483 322 MobiDBLite consensus disorder prediction 22 117 - -
Trre10g00483 322 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 240 IPR005175 -
Trre10g00483 322 Gene3D - 126 261 - -
Trre10g00483 322 CDD DUF296 127 194 IPR005175 -
Trre10g00483 322 PIRSF ESCAROLA 13 322 IPR014476 GO:0003680
Trre10g00483 322 ProSiteProfiles PPC domain profile profile. 123 262 IPR005175 -
Trre10g00483 322 MobiDBLite consensus disorder prediction 256 322 - -
Trre10g00483 322 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 256 - -
Trre10g00483 322 FunFam AT-hook motif nuclear-localized protein 126 253 - -
Trre10g00483 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 316 IPR014476 GO:0003680
Trre10g00483 322 MobiDBLite consensus disorder prediction 28 69 - -
Trre10g00483 322 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00483 Trre-Chr10 3231390 3232358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00483 1 322 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 57.602 6.97e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00483 - - tpra:123911246 471.47