Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00476 ATGAGAAGAACACTGTGTCAAATTCATCTTTCTCATGCTCTATTCATTCCCATTCTCTGTTTGCTTTGGTCTACTGCAACTGTTTCACCAGCAACTGAGAAAGAGATTTTACTTCAATTCAAGGGTAACATCACAGAGGATCCATACAATACATTGAGTTCATGGCTTTCAAGTGGAGACCCTTGTCAAGATTACAAAGGTATTTTCTGTAATATAGAAGGATTTGTAGAAAGAATAGTGCTTTGGAACACTAGCTTGGGTGGAGTTTTGTCACCAGCACTCTCGGGGTTGAAGAATTTGAGGACATTGACATTGTTTGGGAATCGATTTTCGGGTAATATCCCAGATGATTATGCTGATCTTCACTCATTGTGGAAGATCAATGTGAGCTCCAATGCGTTATCCGGTTTGATCCCGGATTTTATTGGTGATTTGCCTAACATTCGCTTTCTTGATTTATCAAAGAATGGCTTCAATGGGGAGATACCTTCAGCTTTGTTTAGGTACTGTTACAAAACCAAGTTTGTTTCTCTTTCTCATAACAATCTTGTTGGTTCAATTCCTGTATCATTGGTTAATTGTCCCAACCTTGAAGGCTTTGATTTTTCTTTCAATAATCTTAGTGGTGTTGTCCCTTCTAGAATCTGTGATATTCCTATGTTATCATATGTATCTCTGAGAAGCAATGCCTTATCAGGGAATGTGAAAGAGTACATTTCTGCATGCCATAGTCTAATGCATTTGGATTTTGGTAGTAATAAGTTTACTGATTTGGCACCATTTAGCATCCTTGGAATGCAAAATCTTACCTATTTTAATATATCCTATAATGGGTTTGAAGGACAAATTCCTGATATCACTTCATGTAGTGAGAGATTAGAGATCTTTGATGCTTCAGGGAATAATTTGAATGGGGTAATTCCATCCAGCATAACTAGATGCAAGAACCTAAAACTCTTGTCATTGGAGTTGAATAGGCTGAAAGGGAGTATCCCGGCTGATATTCAGGAATTGCGAGGGCTATTGGTTATCAAACTGGGTAATAACTCGATAGGCGGAATGATTCCTGAGGGGTTTGGCAACATTGAGCTTCTTGAATTGCTGGATTTGAGCAACCTAAACCTCACTGGCGAAATTCCGGTTGACGTAACAAATTGCAAGTTTCTTCTTGAGCTGGATGTTTCTGGTAATAACTTAGACGGCGAGATTCCTCCGGCTATTTACAAAATGACAAATCTTGAAGCCCTTGACCTACATTATAACCAGCTTAAGGGAATCATCCCATCAAGCCTAGGAAACCTATCAAGGATCCAGTACTTAGATCTATCACATAATTCACTTTCTGGTCCAATCCCTCCTTCTCTTGGAAATTTAAATAACTTGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGTCATTCCTGATATTTCAACCATACAGCATTTTGGTGCACCAGCATTTTCCAATAATCCTTTTCTCTGTGGTGCACCTTTGGAAACCACTTGCTCAACAAAAGGAACTAGATCATCGTCTTCACCTCCGGGGAAGACTAAACTTCTCAGCGTCTCTGCAATTATTGCCATTGTTGCTGCAGCTCTCATTCTTACTGGGGTTTGTTTGGTGACCATTATGAGCATTAGAGCCCGACGTAGAAAAAAAGACAATGATCAGATTATGATTGTTGACGAGAGTACACCTCTAGGATCAAGATCAACAGAATCAAATGTTATAATTGGAAAGTTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGCACTAAAGCATTGCTTGATAAAGAGTCTTTGATAGGAGGTGGATCGATTGGTACAGTTTACAAAACCGATTTTGAAGGTGGCATATCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAATCAGGAGGAATTCGAAAACGAAATCGGGCGACTAGGTAACATTCAACACCATAATTTGGTTGCCTTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTTTGTCAGAGTTTGTTTCAAATGGGAATCTTTATGATAATCTACATGGGCATGGTTATCCTGGAACAAGCACAAGTAGAGGCAATAGGGAATTAGATTGGTCTAGAAGGTTTCACATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCACGACTGCCGACCTCCAATCCTTCACCTCAACCTTAAATCCTCTAATATTCTCTTAGATGACAAGTATGAAGCCAAGTTATCTGATTTTGGATTAGGAAAGTTGTTACCGATTTTGGATAATTACGGTTTGACCAAGTTCCACAATGCTGTTGGTTATGTTGCACCAGAGTTAGCTCAAAGCTTTAGGCAGAGTGAGAAGTGTGACGTTTATAGTTTCGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTAGAAAGTCCAACCACAAGTGAGGTTGTGGTTTTGTGTGAATATGTGAGAAGTCTGTTGGAGACTGGCTCAGCTTCACATTGCTTTGATAGAAATTTACAGGGATTTACTGAGAGTGAATTGATTCAGGTAATGAGATTGGGGATAATATGTACTTCAGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGATTGTTCAGGTCCTTGAGTCCATCAGAAATGGATTGGAATCTCATTAA 2682 0.3971 MRRTLCQIHLSHALFIPILCLLWSTATVSPATEKEILLQFKGNITEDPYNTLSSWLSSGDPCQDYKGIFCNIEGFVERIVLWNTSLGGVLSPALSGLKNLRTLTLFGNRFSGNIPDDYADLHSLWKINVSSNALSGLIPDFIGDLPNIRFLDLSKNGFNGEIPSALFRYCYKTKFVSLSHNNLVGSIPVSLVNCPNLEGFDFSFNNLSGVVPSRICDIPMLSYVSLRSNALSGNVKEYISACHSLMHLDFGSNKFTDLAPFSILGMQNLTYFNISYNGFEGQIPDITSCSERLEIFDASGNNLNGVIPSSITRCKNLKLLSLELNRLKGSIPADIQELRGLLVIKLGNNSIGGMIPEGFGNIELLELLDLSNLNLTGEIPVDVTNCKFLLELDVSGNNLDGEIPPAIYKMTNLEALDLHYNQLKGIIPSSLGNLSRIQYLDLSHNSLSGPIPPSLGNLNNLTHFDLSFNNLSGVIPDISTIQHFGAPAFSNNPFLCGAPLETTCSTKGTRSSSSPPGKTKLLSVSAIIAIVAAALILTGVCLVTIMSIRARRRKKDNDQIMIVDESTPLGSRSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGGISIAVKKLETLGRIRNQEEFENEIGRLGNIQHHNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGHGYPGTSTSRGNRELDWSRRFHIALGTARALAYLHHDCRPPILHLNLKSSNILLDDKYEAKLSDFGLGKLLPILDNYGLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVTGRKPVESPTTSEVVVLCEYVRSLLETGSASHCFDRNLQGFTESELIQVMRLGIICTSEDPLRRPSMAEIVQVLESIRNGLESH 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00476 893 ProSiteProfiles Protein kinase domain profile. 605 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00476 893 Pfam Protein kinase domain 607 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00476 893 Pfam Leucine rich repeat 391 447 IPR001611 GO:0005515
Trre10g00476 893 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Trre10g00476 893 CDD STKc_IRAK 611 886 - -
Trre10g00476 893 SUPERFAMILY L domain-like 168 500 - -
Trre10g00476 893 SUPERFAMILY L domain-like 77 184 - -
Trre10g00476 893 Gene3D Ribonuclease Inhibitor 179 512 IPR032675 -
Trre10g00476 893 SMART LRR_typ_2 145 169 IPR003591 -
Trre10g00476 893 SMART LRR_typ_2 410 433 IPR003591 -
Trre10g00476 893 SMART LRR_typ_2 434 457 IPR003591 -
Trre10g00476 893 SMART LRR_typ_2 121 144 IPR003591 -
Trre10g00476 893 SMART LRR_typ_2 458 481 IPR003591 -
Trre10g00476 893 SMART LRR_typ_2 338 361 IPR003591 -
Trre10g00476 893 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Trre10g00476 893 FunFam Putative LRR receptor-like serine/threonine-protein kinase 582 681 - -
Trre10g00476 893 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 174 883 - -
Trre10g00476 893 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 30 168 - -
Trre10g00476 893 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 682 892 - -
Trre10g00476 893 Gene3D Ribonuclease Inhibitor 31 178 IPR032675 -
Trre10g00476 893 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 169 507 - -
Trre10g00476 893 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Trre10g00476 893 Gene3D Phosphorylase Kinase; domain 1 572 681 - -
Trre10g00476 893 Gene3D Transferase(Phosphotransferase) domain 1 682 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00476 Trre-Chr10 3175198 3177978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00476 14 892 Receptor kinase-like Gene Family AT1G62950 64.600 0.0 1121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trre10g00476 Pkinase 6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00476 - - mtr:11437247 1583.54