Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00458 ATGAAGGTGCAAGCGGCACGAATGGAATTGAGCTTCCATCATCCCAGGGCTATGGCGGGTCGTGCTGTGTCAGGTTTGGGTTCTCTTCTAAATACTGAAGGTGAGGATATTATTGCAAGGATACAATCCTTTTATGAGCAAGCACCAGATGATTTCCGCATCCGTTCTGCCAATGGTGTTATATCAAACGCTATCCTTGGTAATGCTGTTTCCCCTGTACCGATGACATTCGAGGGTATGTGTGAAATACTATCATTAACTGGATCCTTTGGAGCAAACGAAAATGGTATCGTGACCGTGTCTTTAGCGAATAAAGAAGGTCATGTTATCGGTGGTCGTGTAGTCGGTGAAATGATGGCCGCAACTCTTGTAACCGTAGAGTTATGCCGATTGCTTCAAAAAGTTGAGCCCTCAGACATACCGCATATATGCAAGTCTGGGATCGCCGGCACAAATAGATCTACTGCGAAAGGAAACTGGAGAACTACGGGAAACGACAAGGAAATTTACACAGATTAG 519 0.4509 MKVQAARMELSFHHPRAMAGRAVSGLGSLLNTEGEDIIARIQSFYEQAPDDFRIRSANGVISNAILGNAVSPVPMTFEGMCEILSLTGSFGANENGIVTVSLANKEGHVIGGRVVGEMMAATLVTVELCRLLQKVEPSDIPHICKSGIAGTNRSTAKGNWRTTGNDKEIYTD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00458 172 Pfam Plants and Prokaryotes Conserved (PCC) domain 33 128 IPR005175 -
Trre10g00458 172 Gene3D - 31 139 - -
Trre10g00458 172 ProSiteProfiles PPC domain profile profile. 20 154 IPR005175 -
Trre10g00458 172 SUPERFAMILY AF0104/ALDC/Ptd012-like 33 133 - -
Trre10g00458 172 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 134 IPR039605 GO:0003680
Trre10g00458 172 CDD DUF296 32 128 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00458 Trre-Chr10 3099438 3100264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00458 34 132 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 42.056 3.47e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00458 - - mof:131164060 74.7146