Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g00449 | ATGGGTTTAAGTTCTAAGCAAGTTTCTAGTAGAAGTGTTGATTGGAACCAAACCTTGTTGCAAGATCAAAATTTGGAGCTACCAAAAACTCATCCTATGAAGAAAAACCAACAAATTCAACAATCAGAAGTTGTTAATTGTCCAAGATGTGATTCTACTAATACCAAATTTTGTTACTACAATAACTATAACAAGTCTCAACCTCGTCATTTCTGCAGAGCTTGTAAGAGACATTGGACTAAAGGTGGAACTCTTAGAAATGTTCCTGTTGGGGGTGTAAGAAAGAATAAGAAAGTCAAAAAATCAACCTCTCCAATTTCTATTAGCACCTCCACAAAAAATACTATTAGCACCACCACAACTTCTATTAACACCCCAACCACCTCAAATGCTAACATGAAAAATCACACTTCACAGCAAAAACAGAATCAGAAAAACATATCTTTATCTTTATATGATCAATCTGTTATTCATCCACCATCTTTTTTGCCACCTCAGAATCTGATGAGTACTAAAGATCAATCAGAAGGTGATAATAATGATGAGTTTAGTATTGGTAATGGTATGTTTCTGAGTTCATCTATGTCTTTTACTCAAAACCAAAGCCTTATATTTCCATTTTCAAACTCAAGCTCTTTGAGGTCATCTAATGGATATAACTATGGTGAAGAATTTAAAATAATGGAGGAATCAACTATTAACAACAGTGTAATGCCAAGTACTAGTGGTAGTGGCACTATTACACAGCCATGGGAGGAGATACAAGCAGCAACCACTGGCATGGATATGTCAAACTATTGGAGTTGGGAAGATATTGATTCTTTGGTATCAACTGATCTTAATGTTCCTTGGGATGATTCTGATATCAAACCCTGA | 876 | 0.3505 | MGLSSKQVSSRSVDWNQTLLQDQNLELPKTHPMKKNQQIQQSEVVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKKVKKSTSPISISTSTKNTISTTTTSINTPTTSNANMKNHTSQQKQNQKNISLSLYDQSVIHPPSFLPPQNLMSTKDQSEGDNNDEFSIGNGMFLSSSMSFTQNQSLIFPFSNSSSLRSSNGYNYGEEFKIMEESTINNSVMPSTSGSGTITQPWEEIQAATTGMDMSNYWSWEDIDSLVSTDLNVPWDDSDIKP | 291 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g00449 | 291 | ProSitePatterns | Zinc finger Dof-type signature. | 47 | 83 | IPR003851 | GO:0003677|GO:0006355 | |
Trre10g00449 | 291 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 29 | 215 | IPR045174 | GO:0003700|GO:0006355 | |
Trre10g00449 | 291 | MobiDBLite | consensus disorder prediction | 102 | 144 | - | - | |
Trre10g00449 | 291 | Pfam | Dof domain, zinc finger | 43 | 98 | IPR003851 | GO:0003677|GO:0006355 | |
Trre10g00449 | 291 | MobiDBLite | consensus disorder prediction | 95 | 144 | - | - | |
Trre10g00449 | 291 | ProSiteProfiles | Zinc finger Dof-type profile. | 45 | 99 | IPR003851 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g00449 | Trre-Chr10 | 3046355 | 3047230 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre10g00449 | 45 | 101 | C2C2-Dof Transcription Factor Family | AT1G28310 | 79.310 | 2.75e-29 | 112 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Trre10g00449 | zf-Dof | 2e-31 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g00449 | - | - | gmx:100806358 | 319.316 |