Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00439 ATGCAAGAACCAAGCTTGGGAATGATGCACGGTGGTTACGGTGGAGATGGCGGCGGTGGTGATAACCGACAGCTGAAAGCTGAGATAGCAACACATCCTTTGTATGAACAGCTTCTGTCTGCACATGTAGCATGTCTTCGTGTTGCTACTCCTATAGATCAGTTACCTTTGATTGATGCACAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCTCCCCATGATCGTCAACAACTCGACAACTTCCTCGCACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAACTTCAGCAACATGTCAGAGTTCATGCCGTTGAAGCTGTCATGGCTTGCCGTGATATTGAAAATACCTTGCAAGCTCTCACTGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACAATGTCAGATGATGAAGACGAACAAATGCAGATGGATTATTGTTTAGATAATAGTCAATCTGGCAATGGTGGTGATCATGACATGATGGGTCTTGGTCCATTACTTCCTACTGAATCTGAAAGATCGCTCATGGAACGAGTTCGTCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCTCGAATTGAAGATGTACGCGAGGAAATATTAAGGAAAAGAAGAGCCGGTAAATTACCAGGCGACACAACTTCTGTCTTAAAGAATTGGTGGCAGCAACATGCAAAGTGGCCTTATCCAACTGAAGATGACAAAGCAAAACTTGTCGAGGAAACGGGGCTGCAGCTGAAACAAATCAATAACTGGTTCATAAACCAAAGGAAACGAAACTGGCACAGCAATTCTCAATCTGTTACCTCATTGAAGTCGAAACGCAAGAGGTAG 873 0.4273 MQEPSLGMMHGGYGGDGGGGDNRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQMQMDYCLDNSQSGNGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00439 290 SMART HOX_1 215 280 IPR001356 GO:0003677
Trre10g00439 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 277 - -
Trre10g00439 290 Pfam KNOX2 domain 81 132 IPR005541 GO:0003677|GO:0005634
Trre10g00439 290 SMART KNOX2_2 78 133 IPR005541 GO:0003677|GO:0005634
Trre10g00439 290 SUPERFAMILY Homeodomain-like 215 280 IPR009057 -
Trre10g00439 290 ProSiteProfiles ELK domain profile. 193 213 IPR005539 GO:0003677
Trre10g00439 290 FunFam homeobox protein knotted-1-like 3 isoform X1 214 275 - -
Trre10g00439 290 Gene3D - 212 286 - -
Trre10g00439 290 ProSiteProfiles 'Homeobox' domain profile. 213 276 IPR001356 GO:0003677
Trre10g00439 290 CDD homeodomain 216 277 IPR001356 GO:0003677
Trre10g00439 290 Pfam Homeobox KN domain 233 272 IPR008422 GO:0003677|GO:0006355
Trre10g00439 290 Pfam KNOX1 domain 25 66 IPR005540 GO:0003677|GO:0005634
Trre10g00439 290 SMART KNOX1_2 23 67 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00439 Trre-Chr10 2951687 2958895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00439 1 289 Homeobox Transcription Factor Family AT1G62990 79.181 4.05e-171 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre10g00439 KNOX2 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00439 - - tpra:123907403 548.895