Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00430 ATGGATTTTTTCATGTCATTATCTGGTGAATACTCAGACACTTCTTCTGAAACAAGTTCTTCAGAAGTGATTTTGGCATCTGCTAAGCCAAAGAAACAAGCTGGGAGAAGAGTGTTTAAAGAAACAAGACATCCTGTGTACCGAGGAGTACGAAGAAGAAACAATAACAAATGGGTTTGTGAGATGAGAATTCCAAACAAAAACAACAAAAGTAATAATAAGTCAAGAATTTGGCTTGGAACATATACAACACCAGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAGGGGAAATCAGCTTGTCTTAATTTTGCTGATTCAGCATGGAGGTTGAGATTGCCGGAGTCGAATGACGCGGTCGAGATAAGGAGAGCGGCAATGGAAGCTGCTAAGTTGTTTGCGGTTGAAGATGGAGTGGTAGTGGATGATGCATTTGATATGGAAGATTCCAAAAAGAATGTGCTAGAAGTACAAATTCCGGCGGTGTCGTCGGAATTTGAAGAGTTGCATGATTTACTTTTGAGTATTGCAAATGAGCCTTTACGTTCACCTCCTCCTTCCATGAATGATTACTGGGGTGATATGGAGATATTGGACACTCAAATTTCATTGTGGAACTTCTCAATTTGA 642 0.4019 MDFFMSLSGEYSDTSSETSSSEVILASAKPKKQAGRRVFKETRHPVYRGVRRRNNNKWVCEMRIPNKNNKSNNKSRIWLGTYTTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPESNDAVEIRRAAMEAAKLFAVEDGVVVDDAFDMEDSKKNVLEVQIPAVSSEFEELHDLLLSIANEPLRSPPPSMNDYWGDMEILDTQISLWNFSI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00430 213 ProSiteProfiles AP2/ERF domain profile. 46 109 IPR001471 GO:0003700|GO:0006355
Trre10g00430 213 Pfam AP2 domain 45 101 IPR001471 GO:0003700|GO:0006355
Trre10g00430 213 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Trre10g00430 213 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Trre10g00430 213 Gene3D AP2/ERF domain 46 110 IPR036955 GO:0003700|GO:0006355
Trre10g00430 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 210 IPR045277 GO:0003700
Trre10g00430 213 SUPERFAMILY DNA-binding domain 46 111 IPR016177 GO:0003677
Trre10g00430 213 SMART rav1_2 46 115 IPR001471 GO:0003700|GO:0006355
Trre10g00430 213 CDD AP2 47 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00430 Trre-Chr10 2893727 2894368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00430 22 211 AP2-EREBP Transcription Factor Family AT1G12610 46.890 5.28e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00430 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00430 - - psat:127120702 253.062