Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00429 ATGAACTTTTTCATGTCATCATTTAGTGAATACTCAGACACTTCTTCTTCTGAAACTAGTTCTTCTTCAAACCGTATAAGTTCTTCAGAAGTGATTTTGGCGTCTTCTAAGCCAAAGAAAAAAGCAGGGAGAAGAGTGTTTAAGGAAACAAGACATCCTGTGTATCGAGGAGTACGAAGAAGAAACAATAATAAATGGGTTTGTGAGATGAGAGTTCCTAATTGTAATAACAAAAACATTAAGTCAAGAATTTGGCTTGGATCATATCCAACACCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCTGATTCAGCATGGAGATTGAGGTTGCCGGAGTCAAATGATGCCGTAGAGATACGGAGGGCGGCAATGGAAGCTGCTAGGTTGTTTGCGGATGAAGATGGAGTGATTGTGGAAGATGAAAAGGAAGGTTCGAAAAAGAATGTACTAGAAGTACAAATTCCGGCGGTGTCGTCGGAATTTAAAGACTTTGATGATTTGCTTTTGAGTATTGCCAATGAGCCTTTACGTTCACTTCCTACTTCCCCAACAAATTATTATGGTGGTACTTGTAACTGGGGAGACATGGACATTTTTGATACTCAAGTATCACTATGGAACTTCTCAATTTGA 675 0.3926 MNFFMSSFSEYSDTSSSETSSSSNRISSSEVILASSKPKKKAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNCNNKNIKSRIWLGSYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPESNDAVEIRRAAMEAARLFADEDGVIVEDEKEGSKKNVLEVQIPAVSSEFKDFDDLLLSIANEPLRSLPTSPTNYYGGTCNWGDMDIFDTQVSLWNFSI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00429 224 Pfam AP2 domain 53 108 IPR001471 GO:0003700|GO:0006355
Trre10g00429 224 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Trre10g00429 224 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Trre10g00429 224 Gene3D AP2/ERF domain 54 117 IPR036955 GO:0003700|GO:0006355
Trre10g00429 224 MobiDBLite consensus disorder prediction 1 43 - -
Trre10g00429 224 MobiDBLite consensus disorder prediction 1 34 - -
Trre10g00429 224 CDD AP2 55 118 IPR001471 GO:0003700|GO:0006355
Trre10g00429 224 SUPERFAMILY DNA-binding domain 54 118 IPR016177 GO:0003677
Trre10g00429 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 221 IPR045277 GO:0003700
Trre10g00429 224 SMART rav1_2 54 122 IPR001471 GO:0003700|GO:0006355
Trre10g00429 224 ProSiteProfiles AP2/ERF domain profile. 54 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00429 Trre-Chr10 2888785 2889459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00429 26 222 AP2-EREBP Transcription Factor Family AT1G12610 45.872 2.77e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g00429 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00429 - - psat:127120702 252.292