Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00420 ATGGGCGGCGAGGAGAGAGAAAATTGTGCTTATCAAATTCTAGTGGATCGGCTTCAGATTTTGGAGGAGAAACAAGCCTTGCTGACGGAGCAGTTCAGTGAGTTGTTGCAGGAGAAGAAGCTCACGGTCAAAGCTTCAACCGCTGATTTTCTTTCAGGATTCTTCTTCTCCGGAAGTCCTTATGCTAAAGTTTTGAAATGCATGGGGATCTCCGTTTATGTACATAGTGTTTCCACCGGCGAGATCATATACTGGAATAATGCAGCAGAGACTCTATATGGATGGAAGGAGCATGAAGTAATTGGACAAAGAATAGCTGATTTCTTAGTTGCCGAGGAATATTATATATCTCTGCGAAAAATTCTACAACAGTTGATCACAGGAGTGCCATGGTCTGGACAGTTTCCTTTCAAGAAGAGATCTGGTGAAATATTCATGGCAATGGTAACAAAAACTCCTCTTTACGAGGATGGTGTGCTTGTTGGTATTATCAGTGTTTCTAGTGATGCAGCTGTAGTTAACTCTAAGGATTTTGTCAATGGAAGAACTTGCCAATCTCGTGCGAATGACAAACCTGGAATTCAAAGGTTAAAAAGGGTTCAATGGCCTCCACGCCCGCAAATTGCATCATCTGTTTCCAATCTGGCATCAAAGTTTCTTCCACTCCAGCTTACAGATGATTCCGTTTCCAAGAACACTTCAACAGATTCAGATGATGAAAAACAAGGGAAGCCTGGGATTTATGAAACTGAACCTCGTTCCAGAAGTCACCATAAAGAAAACACAACTGTCCGAGAGGCCAGCACGAAGGATGAGTCTACAACTGAACCTAGTCAATCTTCTAAAATTGCAGCTAAAGTCCTTTCTAAGTTTCGAATCGGGGGAAGTGCAAAATGTAGGAAGGATGCTGGAAGTATTAAAGATAATTGCGCAACTGATGATAATTCAAGAAATGCAAAATTTTCTGCACATAGAACTTCTAGTGTTTTCAAAGATAGTTCTGCTATACCTTTCTCAGAGAACAGTTGTGAATGTTCTGGTTCTCCCGTTTCCCAAGATCCTTTGTTAAGATTACACTGCTCTTTCGATCCAAAGAAATTGGAGCCTAAAGCTACGAATTTGGTAATAGAAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGACATTGGTGAGCTCGAAGGAGAGTACAGGTGGCCATTTAAGCAAAGGGAAAAGTGAATCAAACTCTGTTGTAGAGTGTGAAATCCAATGGAAAGACCTTCAATTAAGAAAGGAGATCGGGCAAGGTTCTTTTGCTATTGTTTATCATGGAATTTGGAATGCATCGGATGTTGCCGTCAAGGTTTACTTTGGAAATGGATACACAGAGGCGAATTTACAAGACTACATAAAAGAGGTTGATATAATGAAAAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAATATATTCTCAGGAAAAACATGCCATAGTGACAGAATTATTACCTCGGGGAAGCCTTTTCAGAACACTTCACAAGAACAATCAAACATTGGACATCAGACGGCATCTTAGAATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATAGAGACCTAAAGTCTTCTAACCTGCTTGTTGATAAAAACTGGAATGTAAAGGTTGGAGACTTTGGCCTTTCGAAGTTGAAGGATGCAACTTTACTGACTACCAAATCCGGGAGAGGCACACCTCAATGGATGGCCCCTGAAGTCCTCCGCAGTGAACCTTCAAATGAAAAGTCTGATGTGTTCAGTTACGGTGTCGTCCTTTGGGAAATAATGACTCAATCTATTCCATGGAAAGATTTGAGTTCCTTACAGGTTGTTGGAATAGTAGGCTTTATGGATAGAAGACTGGACCTGCCGGAGGGGCTTGACCCCCATGTCGCATCAATCATAAATGACTGCTGGCAAAGTGATCCACAACAACGTCCTTCATTTGAAGAGCTGATACAGAGAATGATGTTGGCTATCAGCAGAGTATCAACTTTGTCATTAAATGGAATTGCAGAATCCTGA 2073 0.412 MGGEERENCAYQILVDRLQILEEKQALLTEQFSELLQEKKLTVKASTADFLSGFFFSGSPYAKVLKCMGISVYVHSVSTGEIIYWNNAAETLYGWKEHEVIGQRIADFLVAEEYYISLRKILQQLITGVPWSGQFPFKKRSGEIFMAMVTKTPLYEDGVLVGIISVSSDAAVVNSKDFVNGRTCQSRANDKPGIQRLKRVQWPPRPQIASSVSNLASKFLPLQLTDDSVSKNTSTDSDDEKQGKPGIYETEPRSRSHHKENTTVREASTKDESTTEPSQSSKIAAKVLSKFRIGGSAKCRKDAGSIKDNCATDDNSRNAKFSAHRTSSVFKDSSAIPFSENSCECSGSPVSQDPLLRLHCSFDPKKLEPKATNLVIEDEVQKQQEGLTLVSSKESTGGHLSKGKSESNSVVECEIQWKDLQLRKEIGQGSFAIVYHGIWNASDVAVKVYFGNGYTEANLQDYIKEVDIMKRLRHPNVLLFMGAIYSQEKHAIVTELLPRGSLFRTLHKNNQTLDIRRHLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKDATLLTTKSGRGTPQWMAPEVLRSEPSNEKSDVFSYGVVLWEIMTQSIPWKDLSSLQVVGIVGFMDRRLDLPEGLDPHVASIINDCWQSDPQQRPSFEELIQRMMLAISRVSTLSLNGIAES 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00420 690 NCBIfam PAS domain S-box protein 78 169 IPR000014 -
Trre10g00420 690 CDD STKc_MAP3K-like 426 672 - -
Trre10g00420 690 CDD PAS 68 169 IPR000014 -
Trre10g00420 690 SMART serkin_6 420 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00420 690 FunFam PAS domain-containing protein tyrosine kinase family protein 498 686 - -
Trre10g00420 690 ProSiteProfiles Protein kinase domain profile. 420 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g00420 690 SMART pas_2 59 127 IPR000014 -
Trre10g00420 690 ProSiteProfiles PAS repeat profile. 80 129 IPR000014 -
Trre10g00420 690 SUPERFAMILY PYP-like sensor domain (PAS domain) 71 169 IPR035965 -
Trre10g00420 690 Gene3D Transferase(Phosphotransferase) domain 1 499 680 - -
Trre10g00420 690 Pfam PAS domain 77 169 IPR000014 -
Trre10g00420 690 ProSitePatterns Protein kinases ATP-binding region signature. 426 447 IPR017441 GO:0005524
Trre10g00420 690 Pfam Protein tyrosine and serine/threonine kinase 420 671 IPR001245 GO:0004672|GO:0006468
Trre10g00420 690 Gene3D PAS domain 74 173 - -
Trre10g00420 690 Gene3D Phosphorylase Kinase; domain 1 413 497 - -
Trre10g00420 690 MobiDBLite consensus disorder prediction 227 281 - -
Trre10g00420 690 MobiDBLite consensus disorder prediction 232 272 - -
Trre10g00420 690 SUPERFAMILY Protein kinase-like (PK-like) 409 677 IPR011009 -
Trre10g00420 690 PRINTS Tyrosine kinase catalytic domain signature 494 507 IPR001245 GO:0004672|GO:0006468
Trre10g00420 690 PRINTS Tyrosine kinase catalytic domain signature 533 551 IPR001245 GO:0004672|GO:0006468
Trre10g00420 690 PRINTS Tyrosine kinase catalytic domain signature 599 621 IPR001245 GO:0004672|GO:0006468
Trre10g00420 690 PRINTS Tyrosine kinase catalytic domain signature 643 665 IPR001245 GO:0004672|GO:0006468
Trre10g00420 690 PRINTS Tyrosine kinase catalytic domain signature 580 590 IPR001245 GO:0004672|GO:0006468
Trre10g00420 690 Coils Coil 11 38 - -
Trre10g00420 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Trre10g00420 690 FunFam Serine/threonine-protein kinase isoform 1 411 498 - -
Trre10g00420 690 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 239 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00420 Trre-Chr10 2788253 2795004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00420 1 673 MAP Kinase Kinase Kinase AT4G23050 45.082 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre10g00420 PK_Tyr_Ser-Thr 2.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00420 - - gmx:100813707 977.622