Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00419 ATGTCGACGACACGCTCACCGAACCATTCCACAGAAGACATCGTCGATTCAACTCCGTTTCTACCAAATTCCACCGGCTCCTCCGACGAAATCAACTCCGGTCGTCGAATTGTTCGTCGACAGAGACTTCTCCAAGCGGCGAGATTCCTCCGACAAGCAAGCGGACGGCGAATGATGCGCGAACCTTCGGTTGTTGTTCGAGAAGCAGCGGCGGAGCAATTGGAAGAAAGACAAAGCGATTGGGCGTATTCGAAACCTGTTGTGATTCTTGATATCGTTTGGAACTTCGCTTTCGTTGTTGTTTCTGCAACTGCTTTGTTTCTGAGTAGGAATGAATCGCCGGAGATGCCTTTAAGGCTGTGGATTGCTGGTTACGTTCTGCAATGTGTTCTTCATATGGTTTGTGTTTGTTTTGAGTATAGAAGACGGAGAAGGTATCAACGTTCTTCATCTTCGAATGCAGTAGCAGGTTCTGATAGAGTTGGTGGTGTTACCAGTGGGAATTTGAGTTCTGGTTCGAGAGATGGTTCTCGTTCTGTTTCTGGTTCTGGTTCCAGTTCCAGTTATGTTTCATTGGCTCAATTTGGTGAAGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTTATCCGAAGATTCTCCTCAGCTTTACTGGTTATGTATAATCTTTCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTTGCCTGTATCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCTCTTCTTTATGCTGTTGCAGACCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGGCAAAATTCAAATTCCGACGAGTTGAAAGTAATGAGAAACAAACTGATAATATTCAAGAACCTGCTGGAGGTATAATGACTGAATGCCGGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAAGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGATGATGGAGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGTTGTATATTAATGCGACATGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGTAACTTCGGTCCAGAGGAAGTGTAG 1194 0.438 MSTTRSPNHSTEDIVDSTPFLPNSTGSSDEINSGRRIVRRQRLLQAARFLRQASGRRMMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVSATALFLSRNESPEMPLRLWIAGYVLQCVLHMVCVCFEYRRRRRYQRSSSSNAVAGSDRVGGVTSGNLSSGSRDGSRSVSGSGSSSSYVSLAQFGEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALSEDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLAKFKFRRVESNEKQTDNIQEPAGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNFGPEEV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00419 397 MobiDBLite consensus disorder prediction 151 184 - -
Trre10g00419 397 PANTHER TARGET OF ERK KINASE MPK-1 54 388 - -
Trre10g00419 397 SMART ring_2 342 382 IPR001841 -
Trre10g00419 397 MobiDBLite consensus disorder prediction 1 32 - -
Trre10g00419 397 ProSiteProfiles Zinc finger RING-type profile. 342 383 IPR001841 -
Trre10g00419 397 FunFam E3 ubiquitin-protein ligase At1g12760 328 393 - -
Trre10g00419 397 Pfam Ring finger domain 341 383 IPR001841 -
Trre10g00419 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 393 IPR013083 -
Trre10g00419 397 SUPERFAMILY RING/U-box 332 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00419 Trre-Chr10 2781913 2785902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00419 17 390 C3H Transcription Factor Family AT1G68070 47.090 1.52e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00419 - - gmx:100790497 583.178