Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00418 ATGGCGACATTACCGGTGGAGCAAACAGGTGAATCGGCGACGGCGGAGTCGCAGAGATCTATTCCGACGCCGTTTTTGACGAAAACGTATCAGCTCGTTGATGATCCATCTGTTGATGATTTGATTTCATGGAACGAAGATGGAACGAGTTTCATAGTTTGGAAACCTGCTGAATTCGCTAGAGATTTGCTTCCAAAGTATTTCAAACACAATAACTTCTCCAGTTTTGTTCGTCAACTCAACACCTATGGATTTCGGAAAGTTGTACCTGACCGTTGGGAATTTGCGAATGACGGTTTCCGACGAGGCGAGAAAAATCTACTCCGGGATATACAGCGGCGGAAAATAGCGCCGGTGGCAGGAACAGCCATGGCGACGGCTGTGGCTGCGGCCAATACTGTGACTGTAGCTATGGCGGCACCGGTGAGAATGGTGTCTCCAACGACTTCTGGTGACGAGCAGGTAGTTTCTTCGAATTCATCTCCGATTGTGGCGCACAATAGTACTACAGTGCACCGTAGCACCAGTTGCACCACTGCACCTGAGTTATTTGAAGAGAATGAAAGGCTTAAGAAAGAAAATTTGCAACTGAGTAATGAGTTGAGTCAATTAAGAGGTCTTTGTAATAATATACTCTCTATGATGAGTAATTATGCTTCTGGTTTTAGTGGACAGTTAGAATCTTCGACTAGCGCCGCAACAGCACGAGCTGTGCTTGTAAAGGAAGCAAAAGCGTTGGAGCTTTTGCCTACGAGGAATGTTTTGTTAGCTGAGGAACCTGTGGCGGTTAATGCAGGTGGCGTGGCCGGTGGCACGCCATGTGAAATGACGAATTTGGTGGAACATGAGGTTCGGGCACCTAAGGTTCCCAAGTTGTTTGGGGTTTCTATTGGACTTAAACGATATAGGACGGAGAGTGAGGCCGAACCGGAAAGAGAGGTACGAGTTCGGGAACAACATCAAATGCAGTTGCAGATGCAAACACAATCCTCGCAAGAACCTGATCAAGGATCAGATGTGAAATCTGAATCACTAGACGGGGATGACTCGGATGATCAAGAGCATCGTTGGAATTTGATGAAATAG 1086 0.4678 MATLPVEQTGESATAESQRSIPTPFLTKTYQLVDDPSVDDLISWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKIAPVAGTAMATAVAAANTVTVAMAAPVRMVSPTTSGDEQVVSSNSSPIVAHNSTTVHRSTSCTTAPELFEENERLKKENLQLSNELSQLRGLCNNILSMMSNYASGFSGQLESSTSAATARAVLVKEAKALELLPTRNVLLAEEPVAVNAGGVAGGTPCEMTNLVEHEVRAPKVPKLFGVSIGLKRYRTESEAEPEREVRVREQHQMQLQMQTQSSQEPDQGSDVKSESLDGDDSDDQEHRWNLMK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00418 361 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g00418 361 Gene3D - 17 115 IPR036388 -
Trre10g00418 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 336 IPR027725 -
Trre10g00418 361 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g00418 361 MobiDBLite consensus disorder prediction 320 338 - -
Trre10g00418 361 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g00418 361 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g00418 361 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g00418 361 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Trre10g00418 361 Coils Coil 180 207 - -
Trre10g00418 361 MobiDBLite consensus disorder prediction 339 361 - -
Trre10g00418 361 FunFam Heat stress transcription factor B-4 17 115 - -
Trre10g00418 361 MobiDBLite consensus disorder prediction 304 361 - -
Trre10g00418 361 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre10g00418 361 MobiDBLite consensus disorder prediction 304 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00418 Trre-Chr10 2777978 2779169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00418 16 357 HSF AT4G11660 48.159 6.50e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre10g00418 HSF_DNA-bind 5.5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00418 K09419 - gmx:100791020 462.996