Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00417 ATGTCTCATCCAGATTTGCTACATTTATGTCTTTCTTCTCCCAATTGTAACAGTGATACTTGTTTTCTTGAATCAACTCATGTTAACTACGGGAAAGTAAAATCCCAAATTAGCTCGAAAAAGGGATTCTGGACAGATGAAGAGGATAATCTTTTGATTGAGACATTCAAGAAGCACGGCGGAAGCAACTGGAAAAGTATAGCTGCATACTTCCCTGGGAGAACCGACATTGAATGCTTCCATCGTTGGCAAAAGGTTTCGGATTTTGATCTTGGAAAGAGATCATGGACAAAGGAGGAGGATGAGACCTTAACTGAACTGGTGAGAAAGTATGGTTTCAAGAGATGGTCTTTTATTGCAAAGTTCATACCAGGTCGTATTGGAAAGCAATGTCGTGAGAGGTGGCATAATAACCTTGATCCAGCTATAAAAAAGGACGCATGGACGGAGGAGGAAGAATCAATACTTGCTCACTATCACCAAATTTATGGCAGTAAATGGGCAGAAATTGCAAGGGTTCTTCCTGGAAGGAGTGACAATGCTATAAAAAATCATTGGAACAACTCAATGAAGAAGAAATTGTGTACATTGCCTATTAGGCGTGACACGAATGTTCCCACTTCCAGTTTCTGCACTTCTCTAATAAAGCCAGCTGAGGATCAAAATTTAATTGGAATGGCTTCTCCCAAGCAAAGTCACTGGTTGAAGCACAATGCTGATAACCTTCCAACAAGAATGACTATTCGAAATGCTTCCGAAGAGGAATTTTGCTTTGAGAAAAACAGCTTTGCCGTGGAAACTCCTAGGGCCTCGGGACAAGGTTTAAGAAGACCGGTCGATTTAAGAAATGAAATGGAAACAGTTATGGGTTACAAAGACCATGCCAACACTACCTTCTCAGTTAAACATATGAACTCGTCTTCGGATAATTCGTTGGATATGTTCACTACAAATATGGATTGTTTCCCTTCTTCCAGTACCGTTACTTATGAGTCCTATAAGTCTCCCAAATGGCAAAAGGTTTCTTTGTTTGACTCAATGTTTATTGCTGGTAATGAATCCGACAGTCCCCATTTGAGCTACTCAAAATTGGCTAATCATGAGAAGAAAGTTCATCTTGGAAAAGAAAGCAATGACAAAAGCGATGTGAGTCCGGAATCTGTACTAAGAAGCTTAGCAATGACCTATGAGAACACTCCTTCTATTATAAGGAAAAGAACTTCTAGGAAGGCATGCAATGCTGCCAATTATGGCAAGTCTCGAACACCTTCGAGAATTGATGTCTCGACTCCTGAAGCAGGATGTGTAATTGGCTTTGATAATTTAAAACTCAACCAAGGATTTGTTCCATTCCTTCCTAGACATGCAATGGAATGA 1377 0.4009 MSHPDLLHLCLSSPNCNSDTCFLESTHVNYGKVKSQISSKKGFWTDEEDNLLIETFKKHGGSNWKSIAAYFPGRTDIECFHRWQKVSDFDLGKRSWTKEEDETLTELVRKYGFKRWSFIAKFIPGRIGKQCRERWHNNLDPAIKKDAWTEEEESILAHYHQIYGSKWAEIARVLPGRSDNAIKNHWNNSMKKKLCTLPIRRDTNVPTSSFCTSLIKPAEDQNLIGMASPKQSHWLKHNADNLPTRMTIRNASEEEFCFEKNSFAVETPRASGQGLRRPVDLRNEMETVMGYKDHANTTFSVKHMNSSSDNSLDMFTTNMDCFPSSSTVTYESYKSPKWQKVSLFDSMFIAGNESDSPHLSYSKLANHEKKVHLGKESNDKSDVSPESVLRSLAMTYENTPSIIRKRTSRKACNAANYGKSRTPSRIDVSTPEAGCVIGFDNLKLNQGFVPFLPRHAME 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00417 458 CDD SANT 95 139 IPR001005 -
Trre10g00417 458 Gene3D - 146 209 - -
Trre10g00417 458 SUPERFAMILY Homeodomain-like 91 186 IPR009057 -
Trre10g00417 458 CDD SANT 147 188 IPR001005 -
Trre10g00417 458 SMART sant 144 192 IPR001005 -
Trre10g00417 458 SMART sant 92 141 IPR001005 -
Trre10g00417 458 SMART sant 40 89 IPR001005 -
Trre10g00417 458 ProSiteProfiles Myb-like domain profile. 88 139 IPR001005 -
Trre10g00417 458 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Trre10g00417 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 86 IPR017930 -
Trre10g00417 458 SUPERFAMILY Homeodomain-like 37 88 IPR009057 -
Trre10g00417 458 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Trre10g00417 458 Pfam Myb-like DNA-binding domain 93 139 IPR001005 -
Trre10g00417 458 Pfam Myb-like DNA-binding domain 145 188 IPR001005 -
Trre10g00417 458 Pfam Myb-like DNA-binding domain 42 85 IPR001005 -
Trre10g00417 458 Gene3D - 39 88 - -
Trre10g00417 458 FunFam Transcriptional activator Myb isoform A 92 145 - -
Trre10g00417 458 CDD SANT 44 86 IPR001005 -
Trre10g00417 458 PANTHER MYB PROTEIN-RELATED 36 85 - -
Trre10g00417 458 Gene3D - 93 144 - -
Trre10g00417 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 194 IPR017930 -
Trre10g00417 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 143 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00417 Trre-Chr10 2772847 2775429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00417 26 419 MYB Transcription Factor Family AT3G09370 37.745 2.50e-70 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g00417 Myb_DNA-bind_6 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00417 - - psat:127120714 591.652