Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g00412 ATGGGTAAGACAACCCTTGCCCAACTTGTTTTCAATGACCACAGGATCACAGAGCAATTCGAACTTAAAGCTTGGGTCTGTGTTTCACAATCTTTTGATCTTGTTCGTTTCACCCGATCAATTCTGGAGTCATTTAAATCTTCAGCAGCAGATAGTGAAGACTTGGAAATACTCCAACGTCAATTGCAACAGAAGCTAACAGGCAAAAGATATTTGCTTGTTCTAGATGATGTTTGGAACAAAAATGGGTATATGTGGGAGTATTTCCTACTTCGTTTTAGTGGATCTTCAGGAGGTAAGATGATCGTGACAACACATGATGCGGAAGTAGCATCAGTCATGGGGTCCACGCGGTTACATCATTTAAAGCAATTGGAGGAGAATGACAATTGGAGTTTATTTGTGAAATATGCTTTTCGAGGTAGGAATGTGTTTGAATATCCAAACCTTGAATTGATAGGCAAAAAAATAGTTGAAAAGTGTGACGGGTTGCCTTTAGCTCTGAAAATATTGGGGAATCTCTTGGGAAGAAAATTCTCGGAACCTGATTGGGTTAAGATATTGGAGACTGATTTGTGGCGTTTACCGGAGGGTGACAGCAACATTAACTCCATATTGAAATTGAGCTTCCTTAACCTCCCTTCCAATCTGAAATGTTGTTTTGCTTATTGTTCTATACTTCCCAAGGGCTATGAGTTTGAGAAAGGTGAATTAATCAAGCTTTGGATGGCAGAAGGTTTGTTGATGTGTCGGGCAATGATAGAAAATGAAGAAGAGTTGGGTAATCAATTCTTCAATGATCTTGTGTCAATGTCGTTTTTCCAACCATCAGTAATTATGCCATTATGGACTGGTAAGTACTACTTCATCATGCATAATCTTGTCAATGATTTAGCGAAATCAGTGTCAGGAGAATCCCGCTTACGAATAGAGGGTGATAACGTGCATGATATCCCTGAAAGGACGCGTACCATTTGGTGCTGCCTTGATTTGAAAGATGGTGATAGAAAACTAAAGCGTATTCATAAAATTAAGGGACTACACAGTCTGATGTTAGAAGCACAGGGCTATGGTGACCAACGCTTTAAGATAAGCACCAATGTGCAGCAAAATTTGTATTCAAGACTAAAATATTTGCAGATGTTGTCTTTCTCTGGTTGCAATCTCTTAGAGCTAGCTGATGAGATAAGAAATTTAAAGCTTCTGCGCTATCTAGACCTTTCTTACACTGAGATTGTAAGCTTACCTAATTCCGTCTGTATGCTTTATAAGTTGCAGACACTCTTATTGCAAGATTGTTTTAAACTGACTGAGCTCCCTTCCGATTTTTGCAAACTCATCAATTTACGTCATCTTAATTTAGAAGGAACTCATATAAAGAAGATGCCAATGATGATAGGAGGGTTAAACAAGCTTCAGATGCTGACTGATTTTGTTGTCGGAGAGCAGTGTGGATTTGATATTAAGCAGTTGGAGGAACTCAACTATCTTCAAGGAAGGCTTCAAATTTCTGGGTTGGAAAATGTCATTGATCCAGCAGATGCCGTGGCAGCAAATTTGAAAGAGAAGAATCATTTAAAAGAATTAAGCATGTCATACGATGAATGGAGAGAAATGGGTGGCTCAATAACTGAAGCACATGTCTCTGTCTTGGATGCTCTTCAACCAAATAGTAACCTCATGAGGCTAACCATCAAAGACTATAGAGGCAGTAGCTTTCCAAATTGGCTTGGGTATCATCATTTACCCAATTTAGTATCTCTTGAATTGTTGGGATGTAAATTTCATTCCCAGTTGCCACCACTTGGGCAGTTCCCCTCTCTCAAGAAGCTTTCCGTTTCAGGTTGTGATGGAATAAAGATCATTGGTACAGAGTTTTGCGGCTATAATTCATTAATTTTTCCATTTAGATCCCTTGAAACTTTGCGATTTGAGCGCATGTCTGAATGGAAAGAATGGTTATCTCTTGAAGGTTTCCCTTTGCTTCAAGAGCTTTCTATAAAACATTGTCCCAAGTTGAAAAGTGACCTGCCTCAACACCTTCCTTCTTTGCAAAAATTGGAGATTATTGATTGCCAAGAGTTGGAGGCTTCAATTCCCAAGGCTGCTAATATCAGTGAGCTAGAACTAAAAAGATGTGATGGCATTTTGATAAATGAATTGCCATCCCGCTTGAAAAGGGTCATCCTTTGTGGTACTCGGGTTATTGAATCCACCCTAGAGAAAATTCTATATAATAGTGCCTTTCTTGAAGAATTGGAAATTGAAGACTTCTTTGGTCCAAATCTAGAATTGTCCTCTTTGGATTTCAATAGCTGTAATTCTCTTCGTACTCTAACTATAATAGGTTGGAACTCTTTTTCATTGCCTTTTGCACTGCACTTGTTCACCAATCTTAATTCTCTCGTGTTGTACGATAGTCCATGGCTGGAATCGTTTTTCGGGATGCAGTTGCCTTCCAACTTATCCAGTCTTAGAATAGAACGATGCCCTAAATTGATGGCTTCTAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTCTGAAACAATTCAGGGTTAGTGATGATTTTGAAATCTTTGAGTCCTTCCCAGAGGAGAGTCTGCTGCCATCAACTATTAACTCTCTTGAGCTGACAAATTGTCCCAACCTAAGAATAATAAACTACAAGGGTCTTCTCCACCTCACTTCACTTGAATATCTATATATTGAAGACTGCCCTTGTCTTGAGAGCTTGCCAGAGGAGGGTCTACCCAGTACTCTTTCTACTTTGTCCATTCATGATTGTCCATTAATTATGCAGCAGTACCAAAAGGCGCAAGGGGAGCGTTGGCATACAATTAGTCACATTCCTGATGTGACAATTTCCTGA 2871 0.3943 MGKTTLAQLVFNDHRITEQFELKAWVCVSQSFDLVRFTRSILESFKSSAADSEDLEILQRQLQQKLTGKRYLLVLDDVWNKNGYMWEYFLLRFSGSSGGKMIVTTHDAEVASVMGSTRLHHLKQLEENDNWSLFVKYAFRGRNVFEYPNLELIGKKIVEKCDGLPLALKILGNLLGRKFSEPDWVKILETDLWRLPEGDSNINSILKLSFLNLPSNLKCCFAYCSILPKGYEFEKGELIKLWMAEGLLMCRAMIENEEELGNQFFNDLVSMSFFQPSVIMPLWTGKYYFIMHNLVNDLAKSVSGESRLRIEGDNVHDIPERTRTIWCCLDLKDGDRKLKRIHKIKGLHSLMLEAQGYGDQRFKISTNVQQNLYSRLKYLQMLSFSGCNLLELADEIRNLKLLRYLDLSYTEIVSLPNSVCMLYKLQTLLLQDCFKLTELPSDFCKLINLRHLNLEGTHIKKMPMMIGGLNKLQMLTDFVVGEQCGFDIKQLEELNYLQGRLQISGLENVIDPADAVAANLKEKNHLKELSMSYDEWREMGGSITEAHVSVLDALQPNSNLMRLTIKDYRGSSFPNWLGYHHLPNLVSLELLGCKFHSQLPPLGQFPSLKKLSVSGCDGIKIIGTEFCGYNSLIFPFRSLETLRFERMSEWKEWLSLEGFPLLQELSIKHCPKLKSDLPQHLPSLQKLEIIDCQELEASIPKAANISELELKRCDGILINELPSRLKRVILCGTRVIESTLEKILYNSAFLEELEIEDFFGPNLELSSLDFNSCNSLRTLTIIGWNSFSLPFALHLFTNLNSLVLYDSPWLESFFGMQLPSNLSSLRIERCPKLMASREEWGLFQLNSLKQFRVSDDFEIFESFPEESLLPSTINSLELTNCPNLRIINYKGLLHLTSLEYLYIEDCPCLESLPEEGLPSTLSTLSIHDCPLIMQQYQKAQGERWHTISHIPDVTIS 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g00412 956 PANTHER DISEASE RESISTANCE PROTEIN RP 1 692 IPR044974 GO:0006952
Trre10g00412 956 Gene3D - 124 209 IPR042197 -
Trre10g00412 956 SUPERFAMILY RNI-like 636 930 - -
Trre10g00412 956 Gene3D Ribonuclease Inhibitor 725 938 IPR032675 -
Trre10g00412 956 Gene3D - 210 302 IPR036388 -
Trre10g00412 956 Pfam NB-ARC domain 1 189 IPR002182 GO:0043531
Trre10g00412 956 PRINTS Disease resistance protein signature 65 79 - -
Trre10g00412 956 PRINTS Disease resistance protein signature 161 175 - -
Trre10g00412 956 PRINTS Disease resistance protein signature 397 413 - -
Trre10g00412 956 Gene3D Ribonuclease Inhibitor 337 722 IPR032675 -
Trre10g00412 956 SUPERFAMILY L domain-like 288 717 - -
Trre10g00412 956 Gene3D - 1 119 IPR027417 -
Trre10g00412 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 224 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g00412 Trre-Chr10 2736719 2739589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g00412 379 475 WRKY Transcription Factor Family AT4G12020 34.694 7.62e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g00412 - - mtr:11411709 1438.32